Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8KH_RS17615 Genome accession   NZ_CP171580
Coordinates   3680064..3680660 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP06_UID2108280006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3675064..3685660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8KH_RS17595 - 3675257..3677014 (-) 1758 WP_395164810.1 AAA family ATPase -
  ACF8KH_RS17600 matP 3677200..3677652 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8KH_RS17605 ompA 3677783..3678853 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8KH_RS17610 sulA 3679206..3679715 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ACF8KH_RS17615 sxy/tfoX 3680064..3680660 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8KH_RS17620 yccS 3680674..3682809 (-) 2136 WP_155105862.1 YccS family putative transporter -
  ACF8KH_RS17625 - 3682827..3683273 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8KH_RS17630 helD 3683398..3685452 (+) 2055 WP_004176653.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1062177 ACF8KH_RS17615 WP_004179217.1 3680064..3680660(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP06_UID2108280006]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1062177 ACF8KH_RS17615 WP_004179217.1 3680064..3680660(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP06_UID2108280006]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment