Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8J1_RS08935 Genome accession   NZ_CP171565
Coordinates   1845699..1846295 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP15_UID2108280011     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1840699..1851295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8J1_RS08915 - 1840894..1842651 (-) 1758 WP_062920818.1 Lon protease family protein -
  ACF8J1_RS08920 matP 1842837..1843289 (+) 453 WP_064162266.1 macrodomain Ter protein MatP -
  ACF8J1_RS08925 ompA 1843420..1844490 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8J1_RS08930 sulA 1844841..1845350 (-) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  ACF8J1_RS08935 sxy/tfoX 1845699..1846295 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8J1_RS08940 yccS 1846309..1848444 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8J1_RS08945 - 1848462..1848908 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8J1_RS08950 helD 1849033..1851087 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1062067 ACF8J1_RS08935 WP_004179217.1 1845699..1846295(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP15_UID2108280011]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1062067 ACF8J1_RS08935 WP_004179217.1 1845699..1846295(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP15_UID2108280011]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment