Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8JT_RS19655 Genome accession   NZ_CP171562
Coordinates   3996799..3997395 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain KP16_UID2108280012     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3991799..4002395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8JT_RS19635 - 3991994..3993751 (-) 1758 WP_032414743.1 Lon protease family protein -
  ACF8JT_RS19640 matP 3993937..3994389 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8JT_RS19645 ompA 3994520..3995590 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8JT_RS19650 sulA 3995941..3996450 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACF8JT_RS19655 sxy/tfoX 3996799..3997395 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8JT_RS19660 yccS 3997409..3999544 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8JT_RS19665 - 3999562..4000008 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8JT_RS19670 helD 4000133..4002187 (+) 2055 WP_023342915.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1062060 ACF8JT_RS19655 WP_004150836.1 3996799..3997395(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP16_UID2108280012]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1062060 ACF8JT_RS19655 WP_004150836.1 3996799..3997395(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP16_UID2108280012]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment