Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8KE_RS21835 Genome accession   NZ_CP171553
Coordinates   4440679..4441275 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP18_UID2108280014     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4435679..4446275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8KE_RS21820 helD 4435887..4437941 (-) 2055 WP_025368292.1 DNA helicase IV -
  ACF8KE_RS21825 - 4438066..4438512 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8KE_RS21830 yccS 4438530..4440665 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8KE_RS21835 sxy/tfoX 4440679..4441275 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8KE_RS21840 sulA 4441624..4442133 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ACF8KE_RS21845 ompA 4442486..4443556 (+) 1071 WP_002898408.1 porin OmpA -
  ACF8KE_RS21850 matP 4443688..4444140 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8KE_RS21855 - 4444326..4446083 (+) 1758 WP_029602742.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1062011 ACF8KE_RS21835 WP_004179217.1 4440679..4441275(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP18_UID2108280014]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1062011 ACF8KE_RS21835 WP_004179217.1 4440679..4441275(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP18_UID2108280014]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment