Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8KB_RS09070 Genome accession   NZ_CP171525
Coordinates   1902257..1902853 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP25_UID2108280021     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897257..1907853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8KB_RS09050 - 1897449..1899206 (-) 1758 WP_004191101.1 Lon protease family protein -
  ACF8KB_RS09055 matP 1899392..1899844 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8KB_RS09060 ompA 1899976..1901046 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8KB_RS09065 sulA 1901399..1901908 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ACF8KB_RS09070 sxy/tfoX 1902257..1902853 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8KB_RS09075 yccS 1902867..1905002 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8KB_RS09080 - 1905020..1905466 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8KB_RS09085 helD 1905591..1907645 (+) 2055 WP_004176653.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1061853 ACF8KB_RS09070 WP_004179217.1 1902257..1902853(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP25_UID2108280021]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061853 ACF8KB_RS09070 WP_004179217.1 1902257..1902853(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP25_UID2108280021]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment