Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8KF_RS08825 Genome accession   NZ_CP171513
Coordinates   1846503..1847099 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP29_UID2108280025     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1841503..1852099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8KF_RS08805 - 1841696..1843453 (-) 1758 WP_004147851.1 Lon protease family protein -
  ACF8KF_RS08810 matP 1843639..1844091 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8KF_RS08815 ompA 1844222..1845292 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8KF_RS08820 sulA 1845645..1846154 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ACF8KF_RS08825 sxy/tfoX 1846503..1847099 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8KF_RS08830 yccS 1847113..1849248 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8KF_RS08835 - 1849266..1849712 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8KF_RS08840 helD 1849837..1851891 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1061759 ACF8KF_RS08825 WP_004179217.1 1846503..1847099(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP29_UID2108280025]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061759 ACF8KF_RS08825 WP_004179217.1 1846503..1847099(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP29_UID2108280025]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment