Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8JY_RS11000 Genome accession   NZ_CP171510
Coordinates   2200538..2201134 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP30_UID2108280026     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2195538..2206134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8JY_RS10985 helD 2195746..2197800 (-) 2055 WP_023342915.1 DNA helicase IV -
  ACF8JY_RS10990 - 2197925..2198371 (+) 447 WP_021312905.1 YccF domain-containing protein -
  ACF8JY_RS10995 yccS 2198389..2200524 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8JY_RS11000 sxy/tfoX 2200538..2201134 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8JY_RS11005 sulA 2201483..2201992 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACF8JY_RS11010 ompA 2202345..2203415 (+) 1071 WP_002898408.1 porin OmpA -
  ACF8JY_RS11015 matP 2203547..2203999 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8JY_RS11020 - 2204185..2205942 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1061734 ACF8JY_RS11000 WP_004179217.1 2200538..2201134(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP30_UID2108280026]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061734 ACF8JY_RS11000 WP_004179217.1 2200538..2201134(-) (sxy/tfoX) [Klebsiella pneumoniae strain KP30_UID2108280026]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCAAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment