Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8KI_RS04370 Genome accession   NZ_CP171505
Coordinates   914112..914708 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain KP32_UID2108280028     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 909112..919708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8KI_RS04350 - 909305..911062 (-) 1758 WP_016529118.1 Lon protease family protein -
  ACF8KI_RS04355 matP 911248..911700 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8KI_RS04360 ompA 911831..912901 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8KI_RS04365 sulA 913254..913763 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  ACF8KI_RS04370 sxy/tfoX 914112..914708 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8KI_RS04375 yccS 914722..916857 (-) 2136 WP_049118083.1 YccS family putative transporter -
  ACF8KI_RS04380 - 916875..917321 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8KI_RS04385 helD 917446..919500 (+) 2055 WP_395164449.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1061685 ACF8KI_RS04370 WP_004150836.1 914112..914708(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP32_UID2108280028]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061685 ACF8KI_RS04370 WP_004150836.1 914112..914708(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP32_UID2108280028]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment