Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8JL_RS16680 Genome accession   NZ_CP171501
Coordinates   3413469..3414065 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP35_UID2108280031     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408469..3419065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8JL_RS16660 - 3408661..3410418 (-) 1758 WP_004224030.1 Lon protease family protein -
  ACF8JL_RS16665 matP 3410604..3411056 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8JL_RS16670 ompA 3411189..3412259 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8JL_RS16675 sulA 3412611..3413120 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACF8JL_RS16680 sxy/tfoX 3413469..3414065 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8JL_RS16685 yccS 3414079..3416214 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8JL_RS16690 - 3416232..3416678 (-) 447 WP_004224032.1 YccF domain-containing protein -
  ACF8JL_RS16695 helD 3416803..3418857 (+) 2055 WP_004224033.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1061678 ACF8JL_RS16680 WP_004179217.1 3413469..3414065(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP35_UID2108280031]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061678 ACF8JL_RS16680 WP_004179217.1 3413469..3414065(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP35_UID2108280031]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment