Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8JU_RS08335 Genome accession   NZ_CP171499
Coordinates   1772951..1773547 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain KV36_UID2108280032     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767951..1778547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8JU_RS08315 - 1768181..1769938 (-) 1758 WP_117127005.1 Lon protease family protein -
  ACF8JU_RS08320 matP 1770124..1770576 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  ACF8JU_RS08325 ompA 1770687..1771739 (-) 1053 WP_008805892.1 porin OmpA -
  ACF8JU_RS08330 sulA 1772091..1772600 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ACF8JU_RS08335 sxy/tfoX 1772951..1773547 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8JU_RS08340 yccS 1773561..1775696 (-) 2136 WP_008805895.1 YccS family putative transporter -
  ACF8JU_RS08345 - 1775714..1776160 (-) 447 WP_012542294.1 YccF domain-containing protein -
  ACF8JU_RS08350 helD 1776285..1778339 (+) 2055 WP_016160584.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=1061642 ACF8JU_RS08335 WP_012542296.1 1772951..1773547(+) (sxy/tfoX) [Klebsiella variicola strain KV36_UID2108280032]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061642 ACF8JU_RS08335 WP_012542296.1 1772951..1773547(+) (sxy/tfoX) [Klebsiella variicola strain KV36_UID2108280032]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment