Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8JW_RS11160 Genome accession   NZ_CP171492
Coordinates   2359454..2360050 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP39_UID2108280035     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2354454..2365050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8JW_RS11135 - 2354647..2356404 (-) 1758 WP_014907886.1 Lon protease family protein -
  ACF8JW_RS11140 matP 2356590..2357042 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8JW_RS11145 ompA 2357173..2358243 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8JW_RS11150 sulA 2358596..2359105 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACF8JW_RS11155 - 2359148..2359363 (-) 216 WP_009485781.1 hypothetical protein -
  ACF8JW_RS11160 sxy/tfoX 2359454..2360050 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8JW_RS11165 yccS 2360064..2362199 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACF8JW_RS11170 - 2362217..2362663 (-) 447 WP_014907884.1 YccF domain-containing protein -
  ACF8JW_RS11175 helD 2362788..2364842 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1061578 ACF8JW_RS11160 WP_004179217.1 2359454..2360050(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP39_UID2108280035]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061578 ACF8JW_RS11160 WP_004179217.1 2359454..2360050(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP39_UID2108280035]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment