Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8JQ_RS08290 Genome accession   NZ_CP171488
Coordinates   1753456..1754052 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KP41_UID2108280037     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1748456..1759052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8JQ_RS08270 - 1748649..1750406 (-) 1758 WP_032434243.1 Lon protease family protein -
  ACF8JQ_RS08275 matP 1750592..1751044 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8JQ_RS08280 ompA 1751175..1752245 (-) 1071 WP_002898408.1 porin OmpA -
  ACF8JQ_RS08285 sulA 1752598..1753107 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACF8JQ_RS08290 sxy/tfoX 1753456..1754052 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8JQ_RS08295 yccS 1754066..1756201 (-) 2136 WP_032434245.1 YccS family putative transporter -
  ACF8JQ_RS08300 - 1756219..1756665 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACF8JQ_RS08305 helD 1756790..1758844 (+) 2055 WP_004179218.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1061526 ACF8JQ_RS08290 WP_004179217.1 1753456..1754052(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP41_UID2108280037]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061526 ACF8JQ_RS08290 WP_004179217.1 1753456..1754052(+) (sxy/tfoX) [Klebsiella pneumoniae strain KP41_UID2108280037]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment