Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF8KJ_RS15180 Genome accession   NZ_CP171486
Coordinates   3179958..3180554 (+) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain KQ42_UID2108280038     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174958..3185554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8KJ_RS15160 - 3175086..3176843 (-) 1758 WP_153669058.1 Lon protease family protein -
  ACF8KJ_RS15165 matP 3177029..3177481 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACF8KJ_RS15170 ompA 3177678..3178748 (-) 1071 WP_004201430.1 porin OmpA -
  ACF8KJ_RS15175 sulA 3179100..3179609 (-) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  ACF8KJ_RS15180 sxy/tfoX 3179958..3180554 (+) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF8KJ_RS15185 yccS 3180565..3182700 (-) 2136 WP_004201435.1 YccS family putative transporter -
  ACF8KJ_RS15190 - 3182718..3183164 (-) 447 WP_004201437.1 YccF domain-containing protein -
  ACF8KJ_RS15195 helD 3183289..3185343 (+) 2055 WP_057214205.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=1061515 ACF8KJ_RS15180 WP_048323585.1 3179958..3180554(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain KQ42_UID2108280038]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1061515 ACF8KJ_RS15180 WP_048323585.1 3179958..3180554(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain KQ42_UID2108280038]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCAGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment