Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACF3D6_RS10860 Genome accession   NZ_CP171479
Coordinates   2309974..2311788 (-) Length   604 a.a.
NCBI ID   WP_010737099.1    Uniprot ID   -
Organism   Enterococcus hirae strain GY8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2304974..2316788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3D6_RS10840 (ACF3D6_10840) - 2305048..2306505 (+) 1458 WP_034699920.1 glycoside-pentoside-hexuronide (GPH):cation symporter -
  ACF3D6_RS10845 (ACF3D6_10845) - 2306521..2307555 (+) 1035 WP_010737102.1 aldose epimerase family protein -
  ACF3D6_RS10850 (ACF3D6_10850) - 2307558..2308745 (+) 1188 WP_010720860.1 galactokinase -
  ACF3D6_RS10855 (ACF3D6_10855) - 2308963..2309430 (-) 468 WP_034867740.1 DUF4809 family protein -
  ACF3D6_RS10860 (ACF3D6_10860) pepF 2309974..2311788 (-) 1815 WP_010737099.1 oligoendopeptidase F Regulator
  ACF3D6_RS10865 (ACF3D6_10865) - 2311911..2312906 (-) 996 WP_376109818.1 competence protein CoiA -
  ACF3D6_RS10870 (ACF3D6_10870) - 2313006..2313653 (-) 648 WP_010720865.1 adaptor protein MecA -
  ACF3D6_RS10875 (ACF3D6_10875) spxA 2314042..2314440 (-) 399 WP_002296384.1 transcriptional regulator SpxA -
  ACF3D6_RS10880 (ACF3D6_10880) - 2315219..2315926 (+) 708 WP_010720866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69937.30 Da        Isoelectric Point: 4.7922

>NTDB_id=1061437 ACF3D6_RS10860 WP_010737099.1 2309974..2311788(-) (pepF) [Enterococcus hirae strain GY8]
MSETTQLPKREELPEELTWDLTKIFSSDQEFDEKYQELTEELKNSDQYKGTLAKGATEFLNALEFVLDVYRKVELIYVYA
HLKNDQDTANTTYQALYARAGSLFSKVSEAVSWYEPEVLQLSDEQIWQYFEQEPKLELYRHYVKQMVDNRAHILSAEQES
LLAGAGEIFGASSDTFAVLNNADLEFPTIVGEDGKKIQLSHGVYGQLMESTDRTVREAAFKGLYRVYDQFKNTFASTLST
HIKGHNYKAKIRHYHSAREASLSNNHIPESVYDTLIEVVNKNLPLLHRYMELRKRLLNVEKLHMYDLYTPVLGEAPIKFT
YEEAKQKALEALAPMGEEYLSVVEKAFADRWIDVIENKGKRSGAYSSGSYDTNPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRSNQPFVYGDYSIFLAEIASTTNENILTEYLLETEQDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHEEDAKGV
PLTSEYLSDSYGELNAKYYGSAVEKDPEIKYEWSRIPHFYYNYYVYQYATGFSAASALAHKIWGQEPDALEKYLTYLKSG
NSDYPVEVMKKAGVDMTKADYIESAMTKFEQRLNELEELVEKLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1061437 ACF3D6_RS10860 WP_010737099.1 2309974..2311788(-) (pepF) [Enterococcus hirae strain GY8]
ATGAGTGAAACGACCCAATTACCAAAACGAGAAGAATTGCCTGAAGAACTGACTTGGGATCTCACCAAAATCTTTTCTAG
CGATCAAGAATTTGATGAAAAATACCAAGAATTAACAGAAGAATTAAAAAATTCCGATCAATATAAAGGAACATTAGCAA
AGGGTGCGACAGAATTTCTGAATGCGCTTGAATTTGTTTTAGATGTTTACCGAAAAGTGGAACTCATTTATGTCTATGCT
CATTTAAAAAATGACCAAGATACAGCAAATACGACTTATCAAGCGTTATATGCGAGAGCAGGAAGTTTATTTTCTAAAGT
AAGTGAAGCAGTCTCTTGGTATGAACCAGAAGTCCTTCAACTTTCGGATGAGCAGATTTGGCAGTATTTTGAGCAAGAGC
CGAAGTTAGAACTGTATCGTCATTACGTAAAACAAATGGTGGATAATCGTGCGCATATATTATCTGCAGAACAAGAATCA
TTACTAGCTGGAGCAGGAGAAATTTTTGGCGCTTCCAGTGATACATTTGCTGTTTTAAACAATGCCGATCTAGAGTTTCC
TACGATCGTGGGAGAAGATGGGAAAAAAATCCAGCTTTCTCATGGTGTCTATGGTCAATTGATGGAAAGCACAGATCGTA
CAGTTAGAGAAGCTGCATTCAAAGGGCTTTATCGTGTCTATGATCAATTTAAAAATACGTTTGCTTCAACATTGAGTACC
CATATCAAAGGGCACAATTACAAAGCAAAAATTCGCCATTATCATTCTGCTAGAGAAGCTTCTTTGAGCAACAATCATAT
CCCAGAAAGTGTTTATGATACATTGATTGAAGTAGTCAATAAAAATCTTCCGCTATTGCATCGCTATATGGAATTACGCA
AACGTCTTTTAAATGTAGAAAAACTGCATATGTATGATCTATATACACCAGTATTAGGAGAAGCTCCTATCAAGTTCACT
TACGAAGAAGCGAAACAGAAAGCTTTGGAAGCTTTGGCACCAATGGGGGAAGAATATCTGTCAGTGGTAGAAAAAGCTTT
TGCTGACCGTTGGATCGATGTGATCGAAAATAAAGGGAAACGAAGTGGCGCTTATTCTTCAGGAAGCTATGATACCAATC
CTTATATTTTAATGAACTGGCATGATACGTTGGATCAATTATTTACGCTCGTACATGAAATGGGACATAGTGTGCATAGT
TACTTTACTCGTTCAAATCAACCGTTTGTTTACGGTGATTATTCCATTTTCTTAGCAGAGATTGCTTCAACAACTAATGA
AAATATTTTGACAGAATACTTGCTTGAAACTGAACAAGATCCACGTGTTCGTGCATATGTCTTGAATCATTATCTTGATG
GATTCAAAGGAACGATTTTCAGACAAACACAATTTGCAGAATTTGAGCATTTCATGCATGAAGAAGATGCCAAAGGTGTA
CCTTTGACCAGTGAATATCTAAGCGACAGTTATGGGGAATTGAATGCCAAATATTATGGATCAGCGGTAGAAAAAGATCC
GGAAATCAAATATGAATGGTCTCGTATCCCACATTTCTACTATAATTATTATGTTTATCAATATGCAACAGGCTTTTCAG
CTGCCTCTGCTTTGGCGCATAAAATTTGGGGTCAAGAGCCAGATGCTCTAGAAAAATACCTTACTTATTTGAAATCAGGA
AATAGTGATTACCCAGTTGAAGTCATGAAAAAAGCAGGCGTCGACATGACAAAAGCTGATTATATCGAATCAGCTATGAC
TAAGTTTGAACAACGATTAAATGAATTAGAGGAACTAGTTGAAAAATTGTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.566

98.344

0.556

Multiple sequence alignment