Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACGGKE_RS07525 Genome accession   NZ_CP171454
Coordinates   1523493..1524860 (-) Length   455 a.a.
NCBI ID   WP_394441642.1    Uniprot ID   -
Organism   Sphingobium naphthae strain RL-ZY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1518493..1529860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGGKE_RS07495 (ACGGKE_07500) - 1518815..1519432 (+) 618 WP_394441627.1 TetR family transcriptional regulator -
  ACGGKE_RS07500 (ACGGKE_07505) obgE 1519463..1520557 (+) 1095 WP_394441630.1 GTPase ObgE -
  ACGGKE_RS07505 (ACGGKE_07510) proB 1520652..1521785 (+) 1134 WP_394441633.1 glutamate 5-kinase -
  ACGGKE_RS07510 (ACGGKE_07515) - 1521809..1522705 (+) 897 WP_394441808.1 NAD-dependent epimerase/dehydratase family protein -
  ACGGKE_RS07515 (ACGGKE_07520) - 1522759..1522959 (+) 201 WP_394441636.1 hypothetical protein -
  ACGGKE_RS07520 (ACGGKE_07525) - 1522963..1523481 (-) 519 WP_394441639.1 CvpA family protein -
  ACGGKE_RS07525 (ACGGKE_07530) radA 1523493..1524860 (-) 1368 WP_394441642.1 DNA repair protein RadA Machinery gene
  ACGGKE_RS07530 (ACGGKE_07535) - 1524948..1525646 (+) 699 WP_394436620.1 endonuclease/exonuclease/phosphatase family protein -
  ACGGKE_RS07535 (ACGGKE_07540) - 1525716..1528049 (+) 2334 WP_394436623.1 patatin-like protein -
  ACGGKE_RS07540 (ACGGKE_07545) - 1528079..1528594 (+) 516 WP_394441811.1 hypothetical protein -
  ACGGKE_RS07545 (ACGGKE_07550) - 1528596..1528886 (-) 291 WP_394436626.1 4a-hydroxytetrahydrobiopterin dehydratase -
  ACGGKE_RS07550 (ACGGKE_07555) - 1528928..1529335 (+) 408 WP_394436629.1 metallopeptidase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47612.62 Da        Isoelectric Point: 6.6105

>NTDB_id=1061279 ACGGKE_RS07525 WP_394441642.1 1523493..1524860(-) (radA) [Sphingobium naphthae strain RL-ZY01]
MAKAKRKFVCQQCGTVTSRWQGQCEDCGEWNSIVEEVGETVFSARHDLQSGGRAISLVALDSEVALPPRTSTGIAEFDRA
LGGGIVSGSATLIGGDPGIGKSTLLLQAAARIAVRGLSVAYISGEEAADQVRLRAQRLGLGGAPVQLASATSVRDILTTL
GDGPPPALLVIDSIQTMHSDLIEGAPGTVSQVRASAQELIKFAKQRGTAIIMVGHVTKDGSIAGPRVLEHMVDTVLAFEG
ERSHQYRILRAIKNRFGGTDEIGVFAMVAEGLEEVANPSALFLTHRDETVTGATVFPALEGTRPVLVEIQALVVRLSSGA
TPRRAVVGWDSGRLAMILAVLEARCGLSFSTAEVYLNVAGGYRLSDPAADLAVAAALISALSERPVPADVVLFGEVALSS
EIRPVAHAPLRLRESAKLGFNRAFIPAAAADGVKGIAVSGFRTLAQLVDQMLGRG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1061279 ACGGKE_RS07525 WP_394441642.1 1523493..1524860(-) (radA) [Sphingobium naphthae strain RL-ZY01]
ATGGCCAAGGCAAAGCGCAAGTTCGTCTGTCAGCAATGCGGCACCGTCACCAGCCGGTGGCAGGGCCAGTGCGAGGATTG
CGGCGAGTGGAACAGCATCGTCGAGGAGGTGGGCGAGACCGTCTTTTCGGCACGTCATGACTTGCAGAGCGGCGGGCGCG
CGATCTCGCTCGTCGCGCTGGATAGCGAAGTTGCGCTGCCGCCGCGCACCAGCACGGGCATCGCCGAGTTCGACCGGGCG
CTGGGCGGGGGCATCGTGTCGGGTTCCGCCACGCTCATCGGCGGTGATCCGGGTATTGGCAAATCGACATTGCTGCTGCA
GGCCGCCGCGCGCATCGCCGTGCGCGGCCTGTCGGTCGCCTATATCAGCGGCGAAGAGGCGGCCGACCAGGTGCGGTTGC
GCGCCCAGCGGCTGGGCCTTGGCGGCGCGCCGGTGCAACTGGCCAGCGCGACATCGGTGCGCGACATTTTGACGACGCTG
GGGGATGGCCCGCCGCCGGCGCTGCTCGTCATCGATTCGATCCAGACGATGCACAGCGACCTGATCGAAGGCGCGCCCGG
CACCGTCAGCCAGGTGCGGGCGTCGGCGCAGGAATTGATCAAATTCGCCAAGCAGCGCGGCACGGCCATCATCATGGTCG
GCCATGTGACCAAGGATGGCAGCATCGCCGGGCCGCGCGTGCTGGAACATATGGTCGACACCGTGCTCGCTTTCGAAGGG
GAGCGCAGCCATCAATATCGCATCCTGCGCGCGATCAAGAACCGCTTCGGCGGCACGGACGAAATCGGCGTGTTTGCCAT
GGTGGCGGAGGGGCTGGAGGAAGTCGCCAATCCTTCCGCGCTGTTCCTGACCCATCGGGACGAGACGGTGACGGGGGCGA
CGGTCTTTCCCGCGCTGGAGGGGACGCGCCCCGTGCTGGTCGAGATACAGGCGCTGGTGGTGCGGCTGTCGAGCGGCGCG
ACGCCGCGCCGGGCGGTCGTGGGCTGGGACAGCGGTCGACTGGCGATGATCCTGGCGGTGCTGGAAGCGCGATGCGGCCT
CAGCTTTTCTACCGCCGAAGTCTATCTGAACGTCGCGGGCGGCTATCGCCTGTCCGATCCGGCCGCCGATCTGGCGGTGG
CGGCAGCGTTGATCTCCGCCCTGTCGGAGCGCCCGGTGCCCGCCGATGTCGTCCTGTTCGGCGAGGTTGCGCTGTCGAGC
GAGATACGTCCCGTCGCCCATGCGCCGCTGCGGCTGCGGGAGTCGGCGAAGCTGGGCTTCAACCGGGCCTTCATACCCGC
CGCCGCGGCCGATGGGGTGAAGGGCATAGCGGTGAGCGGATTCCGCACGCTTGCGCAGCTGGTTGACCAGATGCTGGGAC
GCGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.268

100

0.49
  radA Streptococcus pneumoniae Rx1

45.614

100

0.457
  radA Streptococcus pneumoniae D39

45.614

100

0.457
  radA Streptococcus pneumoniae R6

45.614

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.614

100

0.457
  radA Streptococcus mitis SK321

45.395

100

0.455
  radA Streptococcus mitis NCTC 12261

45.275

100

0.453

Multiple sequence alignment