Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACGI6K_RS03770 Genome accession   NZ_CP171449
Coordinates   777130..778491 (+) Length   453 a.a.
NCBI ID   WP_376949400.1    Uniprot ID   -
Organism   Azorhizophilus paspali strain ATCC 23833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 772130..783491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGI6K_RS03745 (ACGI6K_03745) - 773675..774877 (-) 1203 WP_376949413.1 acetate kinase -
  ACGI6K_RS03750 (ACGI6K_03750) - 775125..775610 (+) 486 WP_376949410.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ACGI6K_RS03755 (ACGI6K_03755) - 775692..776174 (+) 483 WP_376949408.1 glutathione peroxidase -
  ACGI6K_RS03760 (ACGI6K_03760) mscL 776175..776585 (-) 411 WP_376949405.1 large-conductance mechanosensitive channel protein MscL -
  ACGI6K_RS03765 (ACGI6K_03765) - 776811..777068 (+) 258 WP_376949403.1 YdcH family protein -
  ACGI6K_RS03770 (ACGI6K_03770) radA 777130..778491 (+) 1362 WP_376949400.1 DNA repair protein RadA Machinery gene
  ACGI6K_RS03775 (ACGI6K_03775) - 778558..779019 (+) 462 WP_376949398.1 methyltransferase family protein -
  ACGI6K_RS03780 (ACGI6K_03780) - 779107..779733 (-) 627 WP_376949396.1 response regulator -
  ACGI6K_RS03785 (ACGI6K_03785) - 779730..781094 (-) 1365 WP_376949394.1 cache domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48489.09 Da        Isoelectric Point: 7.3702

>NTDB_id=1061244 ACGI6K_RS03770 WP_376949400.1 777130..778491(+) (radA) [Azorhizophilus paspali strain ATCC 23833]
MAKAKRMYGCTECGATLPKWAGQCGECGAWNTLVETLLEGTATPSGRGGWVGQQASVRTLAEVSVEELPRFSTASKELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNVAERFPALYVTGEESQQQVAMRARRLDLPLDKLKVMTETCIEAIVATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAVFLVGHVTKEGSLAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDNSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALLAAVISSLRNRPLPHDLLVFGEIGLSGEL
RPVPSGQERLKEAAKHGFRRAIVPKGNAPKEAPAGLAVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1061244 ACGI6K_RS03770 WP_376949400.1 777130..778491(+) (radA) [Azorhizophilus paspali strain ATCC 23833]
ATGGCCAAGGCCAAGCGCATGTACGGCTGTACCGAGTGTGGCGCCACCCTCCCGAAATGGGCCGGCCAGTGCGGCGAATG
CGGCGCCTGGAACACCCTGGTGGAAACCCTGCTGGAGGGCACGGCGACGCCGAGCGGGCGCGGCGGCTGGGTCGGCCAGC
AGGCCAGTGTCAGGACCTTGGCGGAGGTCAGCGTCGAGGAGCTGCCGCGCTTTTCCACCGCTTCGAAGGAGCTCGACCGG
GTGCTCGGCGGCGGTCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCGGGAATCGGCAAGTCGACCATCCTTCT
GCAGACCCTGTGCAATGTCGCCGAGCGCTTCCCGGCGCTCTACGTCACCGGCGAGGAATCCCAGCAGCAGGTCGCCATGC
GCGCCCGGCGGCTGGACCTGCCGCTGGACAAGCTCAAAGTAATGACCGAGACCTGCATCGAGGCGATCGTCGCCACCGCC
CGCCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCGGCGCCCGGCGG
CGTCGCCCAGGTGCGCGAGAGCGCGGCGCTGTTGGTGCGTTTCGCCAAGCAGAGTGGCACCGCGGTGTTTCTGGTCGGCC
ACGTGACCAAGGAGGGCTCGCTGGCCGGCCCCCGGGTGCTCGAGCACATGGTCGATACCGTACTGTATTTCGAGGGCGAG
TCCGACGGCCGCCTGCGCCTGTTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGGCATGAC
CGACAAGGGCTTGAAGGAGGTTTCCAATCCCTCAGCGATCTTCCTCACCCGCGCCCAGGAGGCGGTGCCTGGCAGCGTGG
TGATGGCCACCTGGGAGGGCTCGCGGCCGATGCTGGTCGAGGTGCAGGCGCTGGTCGACAACAGCCACCTGGCCAACCCA
CGGCGCGTCACCCTCGGCCTCGACCAGAACCGTCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGCGGTATCCCCAC
CTACGATCAGGATGTTTTTCTCAATGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCGGATCTGGCGCTGCTCGCCG
CAGTGATCTCCAGCCTGCGCAACCGGCCCTTGCCCCACGACCTGCTGGTGTTCGGCGAAATCGGCCTGTCCGGTGAGCTC
CGTCCGGTACCGAGCGGCCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGTTTCAGGCGCGCCATCGTGCCCAAGGGTAA
CGCACCCAAGGAAGCGCCGGCCGGGCTGGCAGTGATCCCGGTGACGCGCCTGGAACAGGCCCTGGATGCGCTCTTCGAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.702

100

0.481
  radA Streptococcus pneumoniae Rx1

45.415

100

0.459
  radA Streptococcus pneumoniae D39

45.415

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.415

100

0.459
  radA Streptococcus pneumoniae R6

45.415

100

0.459
  radA Streptococcus mitis NCTC 12261

45.197

100

0.457
  radA Streptococcus mitis SK321

45.374

100

0.455

Multiple sequence alignment