Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACGTGP_RS16370 Genome accession   NZ_CP171398
Coordinates   3477189..3478073 (-) Length   294 a.a.
NCBI ID   WP_000914774.1    Uniprot ID   N9LGJ0
Organism   Acinetobacter baumannii strain T24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3472189..3483073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS16355 (ACGTGP_16355) miaB 3474036..3475487 (+) 1452 WP_272298081.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACGTGP_RS16360 (ACGTGP_16360) - 3475525..3476613 (+) 1089 WP_000122983.1 PhoH family protein -
  ACGTGP_RS16365 (ACGTGP_16365) ybeY 3476623..3477099 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  ACGTGP_RS16370 (ACGTGP_16370) tonB2 3477189..3478073 (-) 885 WP_000914774.1 energy transducer TonB Machinery gene
  ACGTGP_RS16375 (ACGTGP_16375) - 3478305..3478976 (+) 672 WP_001193960.1 hypothetical protein -
  ACGTGP_RS16380 (ACGTGP_16380) - 3479134..3479847 (+) 714 WP_272298082.1 DUF3108 domain-containing protein -
  ACGTGP_RS16385 (ACGTGP_16385) - 3479920..3480495 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  ACGTGP_RS16390 (ACGTGP_16390) wrbA 3480548..3481141 (-) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  ACGTGP_RS16395 (ACGTGP_16395) - 3481429..3482676 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33622.48 Da        Isoelectric Point: 9.0935

>NTDB_id=1061163 ACGTGP_RS16370 WP_000914774.1 3477189..3478073(-) (tonB2) [Acinetobacter baumannii strain T24]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1061163 ACGTGP_RS16370 WP_000914774.1 3477189..3478073(-) (tonB2) [Acinetobacter baumannii strain T24]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LGJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment