Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AAA980_RS11525 Genome accession   NZ_AP028604
Coordinates   2193824..2194582 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Pne3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2188824..2199582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA980_RS11495 (TKY182805_22300) comE 2189421..2190173 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  AAA980_RS11500 (TKY182805_22310) comD/comD1 2190170..2191495 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  AAA980_RS11505 (TKY182805_22320) comC/comC1 2191516..2191641 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  AAA980_RS11515 (TKY182805_22330) rlmH 2191923..2192402 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AAA980_RS11520 (TKY182805_22340) htrA 2192585..2193766 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  AAA980_RS11525 (TKY182805_22350) spo0J 2193824..2194582 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=106098 AAA980_RS11525 WP_000410383.1 2193824..2194582(+) (spo0J) [Streptococcus pneumoniae strain Pne3]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=106098 AAA980_RS11525 WP_000410383.1 2193824..2194582(+) (spo0J) [Streptococcus pneumoniae strain Pne3]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment