Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACGTJS_RS07820 Genome accession   NZ_CP171363
Coordinates   1591087..1592064 (+) Length   325 a.a.
NCBI ID   WP_315042113.1    Uniprot ID   -
Organism   Faucicola mancuniensis strain GVCNT2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586087..1597064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTJS_RS07800 (ACGTJS_07800) - 1586490..1587128 (+) 639 WP_410471661.1 hypothetical protein -
  ACGTJS_RS07805 (ACGTJS_07805) - 1587133..1588605 (-) 1473 WP_410471662.1 M16 family metallopeptidase -
  ACGTJS_RS07810 (ACGTJS_07810) - 1588617..1590035 (-) 1419 WP_410471663.1 M16 family metallopeptidase -
  ACGTJS_RS07815 (ACGTJS_07815) - 1590230..1591012 (+) 783 WP_315042115.1 hypothetical protein -
  ACGTJS_RS07820 (ACGTJS_07820) pilA 1591087..1592064 (+) 978 WP_315042113.1 signal recognition particle-docking protein FtsY Machinery gene
  ACGTJS_RS07825 (ACGTJS_07825) - 1592095..1592310 (+) 216 WP_410471664.1 hypothetical protein -
  ACGTJS_RS07830 (ACGTJS_07830) - 1592303..1593022 (+) 720 WP_315042109.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  ACGTJS_RS07835 (ACGTJS_07835) - 1593043..1593591 (+) 549 WP_410471665.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACGTJS_RS07840 (ACGTJS_07840) - 1593653..1595071 (+) 1419 WP_410471666.1 MBOAT family O-acyltransferase -
  ACGTJS_RS07845 (ACGTJS_07845) - 1595084..1596139 (+) 1056 WP_410471667.1 DUF459 domain-containing protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35256.26 Da        Isoelectric Point: 4.9236

>NTDB_id=1060920 ACGTJS_RS07820 WP_315042113.1 1591087..1592064(+) (pilA) [Faucicola mancuniensis strain GVCNT2]
MTDQNVQSSEQTEQAEQKGGWFSRMKQGLAKSSKNLTDGLTNILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLT
EATARGDLIYSHSLYKALQKELNDILEPKVKPLGIDTSKKPFVILMVGVNGVGKTTTIGKLAKRLQAEGKTVMLAAGDTF
RAAATEQLQVWGERNNIPVVAQGHGSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTNLMEELKKVIRVMQKADPTAP
HEAMIVLDAGTGQNAINQVEIFNEAVPLTGVTITKLDGTAKGGVVFNIAENTDIPIRFIGVGEKIDDLRPFKSEDFVKAL
FEKDE

Nucleotide


Download         Length: 978 bp        

>NTDB_id=1060920 ACGTJS_RS07820 WP_315042113.1 1591087..1592064(+) (pilA) [Faucicola mancuniensis strain GVCNT2]
ATGACAGACCAAAATGTGCAATCATCTGAACAAACCGAACAAGCTGAACAAAAAGGCGGTTGGTTTAGCCGTATGAAACA
AGGGCTTGCCAAAAGTAGCAAAAACCTAACAGACGGTTTAACCAATATTTTAATCGGTGGTAAAGAAATTGATGATGAAC
TGCTTGAAGAAGTGGAAGACCAGCTGCTTGTCGCTGACATTGGCGTGAATGCGACCAATCGCATTATCAAAAACTTAACC
GAAGCGACTGCTCGTGGCGATTTGATTTATTCACATTCGTTATACAAAGCCTTGCAAAAAGAGTTGAACGATATTCTTGA
ACCAAAAGTTAAACCGCTTGGTATAGACACAAGCAAAAAACCGTTTGTGATTTTGATGGTGGGCGTGAATGGCGTTGGCA
AAACCACCACAATCGGCAAACTTGCCAAACGCTTACAAGCTGAAGGCAAAACAGTCATGTTAGCAGCTGGCGATACTTTC
CGTGCAGCAGCGACCGAACAGCTACAAGTCTGGGGCGAACGCAACAACATTCCTGTGGTCGCTCAAGGGCATGGTTCGGA
CAGTGCGTCTGTGATTTTTGATGCGATGCAATCGGCAAAAGCCAAAAATATTGACGTGCTAATTGCTGATACCGCAGGGC
GTTTGCAAAACAAAACTAATCTTATGGAAGAACTGAAAAAAGTCATCCGTGTTATGCAAAAAGCCGACCCAACCGCACCG
CATGAAGCCATGATAGTGCTAGACGCAGGTACAGGACAAAATGCGATTAATCAAGTGGAAATCTTTAACGAAGCTGTGCC
TTTAACAGGCGTAACCATTACCAAGCTAGACGGTACGGCAAAAGGTGGCGTGGTGTTTAACATTGCCGAAAATACCGATA
TTCCAATTCGTTTTATCGGTGTGGGTGAAAAAATTGATGATTTGCGTCCGTTTAAATCGGAGGATTTTGTCAAAGCGTTG
TTTGAAAAAGATGAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(36-102)

SRP54-type protein, GTPase domain (SRP54)

(121-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.42

94.462

0.505

Multiple sequence alignment