Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | ACF8JF_RS14705 | Genome accession | NZ_CP171351 |
| Coordinates | 2929572..2930177 (-) | Length | 201 a.a. |
| NCBI ID | WP_001202375.1 | Uniprot ID | A0A5I0N148 |
| Organism | Salmonella enterica subsp. enterica serovar Bareilly strain UTK W1-0003 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2921312..2963784 | 2929572..2930177 | within | 0 |
Gene organization within MGE regions
Location: 2921312..2963784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF8JF_RS14665 (ACF8JF_14660) | rlmI | 2921320..2922531 (+) | 1212 | WP_000140480.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| ACF8JF_RS14670 (ACF8JF_14665) | hspQ | 2922589..2922906 (+) | 318 | WP_000561983.1 | heat shock protein HspQ | - |
| ACF8JF_RS14675 (ACF8JF_14670) | - | 2922951..2923364 (-) | 414 | WP_001537782.1 | CoA-binding protein | - |
| ACF8JF_RS14680 (ACF8JF_14675) | - | 2923538..2924200 (+) | 663 | WP_000847732.1 | DUF2057 family protein | - |
| ACF8JF_RS14685 (ACF8JF_14680) | mgsA | 2924295..2924753 (+) | 459 | WP_000424187.1 | methylglyoxal synthase | - |
| ACF8JF_RS14690 (ACF8JF_14685) | helD | 2924789..2926843 (-) | 2055 | WP_000420498.1 | DNA helicase IV | - |
| ACF8JF_RS14695 (ACF8JF_14690) | - | 2926967..2927413 (+) | 447 | WP_001261224.1 | YccF domain-containing protein | - |
| ACF8JF_RS14700 (ACF8JF_14695) | yccS | 2927432..2929585 (+) | 2154 | WP_000950876.1 | YccS family putative transporter | - |
| ACF8JF_RS14705 (ACF8JF_14700) | sxy/tfoX | 2929572..2930177 (-) | 606 | WP_001202375.1 | TfoX/Sxy family DNA transformation protein | Regulator |
| ACF8JF_RS14710 (ACF8JF_14705) | sulA | 2930394..2930903 (+) | 510 | WP_000288732.1 | SOS-induced cell division inhibitor SulA | - |
| ACF8JF_RS14715 (ACF8JF_14710) | ompA | 2931260..2932315 (+) | 1056 | WP_023239146.1 | porin OmpA | - |
| ACF8JF_RS14720 (ACF8JF_14715) | matP | 2932387..2932839 (-) | 453 | WP_000877172.1 | macrodomain Ter protein MatP | - |
| ACF8JF_RS14725 (ACF8JF_14720) | - | 2933025..2934785 (+) | 1761 | WP_000156454.1 | AAA family ATPase | - |
| ACF8JF_RS14730 (ACF8JF_14725) | fabA | 2934854..2935372 (+) | 519 | WP_000227928.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| ACF8JF_RS14735 (ACF8JF_14730) | rmf | 2935473..2935640 (-) | 168 | WP_001537784.1 | ribosome modulation factor | - |
| ACF8JF_RS14740 (ACF8JF_14735) | pqiC | 2935896..2936459 (-) | 564 | WP_000759136.1 | membrane integrity-associated transporter subunit PqiC | - |
| ACF8JF_RS14745 (ACF8JF_14740) | pqiB | 2936456..2938096 (-) | 1641 | WP_000433414.1 | intermembrane transport protein PqiB | - |
| ACF8JF_RS14750 (ACF8JF_14745) | pqiA | 2938101..2939354 (-) | 1254 | WP_023239145.1 | membrane integrity-associated transporter subunit PqiA | - |
| ACF8JF_RS14755 (ACF8JF_14750) | - | 2939369..2941276 (-) | 1908 | WP_000053044.1 | ABC transporter ATP-binding protein | - |
| ACF8JF_RS14760 (ACF8JF_14755) | rlmKL | 2941289..2943397 (-) | 2109 | WP_001086481.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| ACF8JF_RS14765 (ACF8JF_14760) | - | 2943496..2944605 (+) | 1110 | WP_000224079.1 | YcbX family protein | - |
| ACF8JF_RS14770 (ACF8JF_14765) | zapC | 2944602..2945144 (-) | 543 | WP_001220671.1 | cell division protein ZapC | - |
| ACF8JF_RS14775 (ACF8JF_14770) | pyrD | 2945310..2946320 (-) | 1011 | WP_000291723.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| ACF8JF_RS14780 (ACF8JF_14775) | pepN | 2946528..2949140 (-) | 2613 | WP_000193771.1 | aminopeptidase N | - |
| ACF8JF_RS14785 (ACF8JF_14780) | pncB | 2949407..2950609 (+) | 1203 | WP_000191400.1 | nicotinate phosphoribosyltransferase | - |
| ACF8JF_RS14790 (ACF8JF_14785) | - | 2950687..2952123 (-) | 1437 | WP_023239144.1 | alanine/glycine:cation symporter family protein | - |
| ACF8JF_RS14795 (ACF8JF_14790) | dpaL | 2952369..2953583 (-) | 1215 | WP_000544851.1 | diaminopropionate ammonia-lyase | - |
| ACF8JF_RS14800 (ACF8JF_14795) | - | 2953900..2954361 (+) | 462 | WP_000762344.1 | Lrp/AsnC family transcriptional regulator | - |
| ACF8JF_RS14805 (ACF8JF_14800) | asnS | 2954562..2955962 (+) | 1401 | WP_000117867.1 | asparagine--tRNA ligase | - |
| ACF8JF_RS14810 (ACF8JF_14805) | ompF | 2956568..2957659 (+) | 1092 | WP_000977709.1 | porin OmpF | - |
| ACF8JF_RS14815 (ACF8JF_14810) | aspC | 2957844..2959034 (+) | 1191 | WP_000462653.1 | aspartate transaminase | - |
| ACF8JF_RS14825 (ACF8JF_14820) | - | 2960411..2961058 (-) | 648 | WP_001109471.1 | MBL fold metallo-hydrolase | - |
| ACF8JF_RS14830 (ACF8JF_14825) | - | 2961086..2961634 (-) | 549 | WP_000357052.1 | YcbK family protein | - |
| ACF8JF_RS14835 (ACF8JF_14830) | ldtD | 2961894..2963744 (-) | 1851 | WP_000925869.1 | L,D-transpeptidase | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23174.94 Da Isoelectric Point: 8.7403
>NTDB_id=1060796 ACF8JF_RS14705 WP_001202375.1 2929572..2930177(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bareilly strain UTK W1-0003]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
Nucleotide
Download Length: 606 bp
>NTDB_id=1060796 ACF8JF_RS14705 WP_001202375.1 2929572..2930177(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bareilly strain UTK W1-0003]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
75.879 |
99.005 |
0.751 |