Detailed information NTG1060740

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: ACF60M_RS11520
• Genome accession: NZ_CP171347
• Coordinates: 2314765..2315460 (-)
• Length: 231 a.a.
• NCBI ID: WP_392885371.1
• Uniprot ID: -
• Organism: Eubacterium limosum strain El1405
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 2309765..2320460

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF60M_RS11495 (ACF60M_11495)	-	2309807..2311225 (-)	1419	WP_392885366.1	C69 family dipeptidase	-
ACF60M_RS11500 (ACF60M_11500)	-	2311443..2312492 (-)	1050	WP_392885367.1	response regulator	-
ACF60M_RS11510 (ACF60M_11510)	-	2312859..2313257 (+)	399	WP_133965585.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
ACF60M_RS11515 (ACF60M_11515)	-	2313313..2314752 (-)	1440	WP_392885370.1	sensor histidine kinase	-
ACF60M_RS11520 (ACF60M_11520)	scnR	2314765..2315460 (-)	696	WP_392885371.1	response regulator transcription factor	Regulator
ACF60M_RS11525 (ACF60M_11525)	-	2315613..2316521 (+)	909	WP_270504558.1	ABC transporter ATP-binding protein	-
ACF60M_RS11530 (ACF60M_11530)	-	2316521..2317270 (+)	750	WP_038351562.1	ABC transporter permease	-
ACF60M_RS11535 (ACF60M_11535)	-	2317283..2318017 (+)	735	WP_038351561.1	ABC transporter permease	-
ACF60M_RS11540 (ACF60M_11540)	-	2318393..2319877 (-)	1485	WP_038351560.1	glycerol kinase GlpK	-

Sequence

Protein

• Length: 231 a.a.
• Molecular weight: 25734.94 Da
• Isoelectric Point: 4.9135

>NTDB_id=1060740 ACF60M_RS11520 WP_392885371.1 2314765..2315460(-) (scnR) [Eubacterium limosum strain El1405]
MDYIKDKGILLVDDEPELLKLVLKILKNEGFVKVYTASSVAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRTSSDIP
VLFLSARGNAEDRFTGFGLGADDYIIKPFLPQELVFRINAILKRAYKNEAPTFTLADATVDLDRAEIIRGEELLPLTAKE
HAILQKLYENAGKIVTIGALCDFVWEGDSYGYEKPLMAHIGRIREKIEADPSHPKSLTTVKGLGYKLLVNK

Nucleotide

• Length: 696 bp

>NTDB_id=1060740 ACF60M_RS11520 WP_392885371.1 2314765..2315460(-) (scnR) [Eubacterium limosum strain El1405]
ATGGATTACATCAAAGATAAAGGCATTCTTCTGGTTGACGATGAACCAGAGCTTTTAAAGCTGGTGCTTAAGATACTCAA
AAATGAAGGCTTTGTGAAGGTTTATACAGCGTCGAGCGTGGCCGAGGGAATGACCGTTTTCCTGGAAAAAGCTCCTGATA
TGGCCGTGCTTGATGTGATGCTGCCAGATGGTGAGGGTTTTGAGCTGCTCAAATTCATCCGTACATCTTCGGATATCCCT
GTGCTTTTTCTATCAGCCAGAGGCAATGCCGAGGACCGGTTCACCGGCTTTGGTCTGGGTGCGGATGATTATATTATCAA
GCCCTTTTTGCCGCAGGAGCTTGTGTTTAGGATCAATGCTATTTTAAAACGTGCCTATAAAAATGAAGCGCCGACCTTTA
CTCTGGCTGATGCCACAGTAGATCTGGACCGCGCTGAGATTATCAGGGGAGAGGAGCTTCTGCCCCTTACGGCCAAAGAG
CACGCCATTCTTCAAAAGCTCTATGAGAACGCAGGGAAAATCGTAACCATCGGCGCCCTCTGCGATTTTGTATGGGAGGG
TGACAGCTATGGCTATGAAAAACCGCTCATGGCTCATATCGGGCGTATCCGGGAAAAAATCGAGGCTGACCCCAGCCATC
CAAAGTCTCTTACTACGGTCAAGGGGCTGGGCTATAAATTGTTAGTAAATAAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (154-227)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	50	99.567	0.498