Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   DX05_RS09095 Genome accession   NZ_CP007572
Coordinates   1824148..1824657 (-) Length   169 a.a.
NCBI ID   WP_000392201.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS6     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1819148..1829657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DX05_RS09070 (DX05_09210) tsaD 1819657..1820667 (-) 1011 WP_000655093.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  DX05_RS09075 (DX05_09215) rimI 1820743..1821150 (-) 408 WP_000445944.1 ribosomal protein S18-alanine N-acetyltransferase -
  DX05_RS09080 (DX05_09220) tsaB 1821152..1821844 (-) 693 WP_000978603.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  DX05_RS09085 (DX05_09225) - 1822023..1822253 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  DX05_RS09090 (DX05_09230) - 1822307..1823986 (+) 1680 WP_000065495.1 ribonuclease J -
  DX05_RS09095 (DX05_09235) lytF 1824148..1824657 (-) 510 WP_000392201.1 CHAP domain-containing protein Regulator
  DX05_RS09100 (DX05_09240) glnA 1824805..1826151 (-) 1347 WP_000156223.1 type I glutamate--ammonia ligase -
  DX05_RS09105 (DX05_09245) - 1826185..1826556 (-) 372 WP_000664341.1 MerR family transcriptional regulator -
  DX05_RS09110 (DX05_09250) - 1826636..1827175 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  DX05_RS09115 (DX05_09255) - 1827404..1828855 (-) 1452 WP_041326704.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18304.21 Da        Isoelectric Point: 4.4055

>NTDB_id=106063 DX05_RS09095 WP_000392201.1 1824148..1824657(-) (lytF) [Streptococcus agalactiae strain GBS6]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=106063 DX05_RS09095 WP_000392201.1 1824148..1824657(-) (lytF) [Streptococcus agalactiae strain GBS6]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGCGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414

Multiple sequence alignment