Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   ACF0HW_RS16610 Genome accession   NZ_CP171208
Coordinates   3357329..3357493 (-) Length   54 a.a.
NCBI ID   WP_012116773.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HN11     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3352329..3362493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS16610 comS 3357329..3357493 (-) 165 WP_012116773.1 competence protein ComS Regulator
  ACF0HW_RS16615 srfAB 3357558..3360602 (-) 3045 Protein_3253 surfactin non-ribosomal peptide synthetase SrfAB -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6153.16 Da        Isoelectric Point: 12.0559

>NTDB_id=1060510 ACF0HW_RS16610 WP_012116773.1 3357329..3357493(-) (comS) [Bacillus amyloliquefaciens strain HN11]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=1060510 ACF0HW_RS16610 WP_012116773.1 3357329..3357493(-) (comS) [Bacillus amyloliquefaciens strain HN11]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

61.364

81.481

0.5

Multiple sequence alignment