Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ACF0HW_RS14095 Genome accession   NZ_CP171208
Coordinates   2859881..2860672 (-) Length   263 a.a.
NCBI ID   WP_012117114.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HN11     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2854881..2865672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS14055 - 2855147..2855482 (-) 336 WP_012117120.1 SdpI family protein -
  ACF0HW_RS14060 - 2855568..2856095 (-) 528 WP_012117119.1 SH3 domain-containing protein -
  ACF0HW_RS14065 - 2856228..2856497 (-) 270 WP_012117118.1 YfhJ family protein -
  ACF0HW_RS14070 - 2856621..2856773 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  ACF0HW_RS14075 - 2856920..2857831 (+) 912 WP_012117117.1 serine protease -
  ACF0HW_RS14080 - 2857794..2858183 (+) 390 WP_012117116.1 DUF2606 family protein -
  ACF0HW_RS14085 - 2858223..2859416 (-) 1194 WP_123912797.1 MFS transporter -
  ACF0HW_RS14090 - 2859560..2859874 (-) 315 WP_007408553.1 YfhH family protein -
  ACF0HW_RS14095 recX 2859881..2860672 (-) 792 WP_012117114.1 recombination regulator RecX Regulator
  ACF0HW_RS14100 - 2860764..2861663 (+) 900 WP_012117113.1 TIGR01777 family oxidoreductase -
  ACF0HW_RS14105 - 2861721..2861831 (+) 111 WP_003155504.1 YfhE family protein -
  ACF0HW_RS14110 - 2861902..2862093 (+) 192 WP_003155508.1 YfhD family protein -
  ACF0HW_RS14115 - 2862134..2862718 (-) 585 WP_007408549.1 nitroreductase -
  ACF0HW_RS14120 - 2862795..2863679 (-) 885 WP_012117112.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31004.21 Da        Isoelectric Point: 6.0921

>NTDB_id=1060505 ACF0HW_RS14095 WP_012117114.1 2859881..2860672(-) (recX) [Bacillus amyloliquefaciens strain HN11]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1060505 ACF0HW_RS14095 WP_012117114.1 2859881..2860672(-) (recX) [Bacillus amyloliquefaciens strain HN11]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGACGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment