Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACF0HW_RS08000 Genome accession   NZ_CP171208
Coordinates   1581506..1582114 (-) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus amyloliquefaciens strain HN11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1576506..1587114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS07980 dnaD 1576742..1577440 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  ACF0HW_RS07985 nth 1577459..1578118 (+) 660 WP_007612187.1 endonuclease III -
  ACF0HW_RS07990 - 1578115..1578606 (+) 492 WP_012117839.1 YpoC family protein -
  ACF0HW_RS07995 - 1578684..1581467 (-) 2784 WP_023356988.1 PBP1A family penicillin-binding protein -
  ACF0HW_RS08000 recU 1581506..1582114 (-) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  ACF0HW_RS08005 - 1582156..1583118 (+) 963 WP_014305287.1 DUF2515 domain-containing protein -
  ACF0HW_RS08010 sspM 1583162..1583266 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  ACF0HW_RS08015 - 1583472..1583717 (+) 246 WP_012117836.1 DUF5446 family protein -
  ACF0HW_RS08020 - 1583763..1584131 (+) 369 WP_007409492.1 YppE family protein -
  ACF0HW_RS08025 - 1584170..1584352 (-) 183 WP_003153532.1 YppF family protein -
  ACF0HW_RS08030 - 1584539..1584973 (+) 435 WP_012117835.1 YppG family protein -
  ACF0HW_RS08035 - 1585003..1585416 (-) 414 WP_012117834.1 Hsp20/alpha crystallin family protein -
  ACF0HW_RS08040 - 1585555..1586061 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=1060482 ACF0HW_RS08000 WP_012117837.1 1581506..1582114(-) (recU) [Bacillus amyloliquefaciens strain HN11]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1060482 ACF0HW_RS08000 WP_012117837.1 1581506..1582114(-) (recU) [Bacillus amyloliquefaciens strain HN11]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAAATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment