Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACF0HW_RS06695 | Genome accession | NZ_CP171208 |
| Coordinates | 1297083..1297349 (+) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain HN11 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1292083..1302349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACF0HW_RS06675 | - | 1292348..1293649 (-) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| ACF0HW_RS06680 | - | 1293795..1294745 (+) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| ACF0HW_RS06685 | comGA | 1294942..1296012 (+) | 1071 | WP_012117985.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACF0HW_RS06690 | comGB | 1295999..1297036 (+) | 1038 | WP_012117984.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACF0HW_RS06695 | comGC | 1297083..1297349 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACF0HW_RS06700 | comGD | 1297339..1297776 (+) | 438 | WP_012117983.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACF0HW_RS06705 | comGE | 1297760..1298074 (+) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| ACF0HW_RS06710 | comGF | 1297983..1298483 (+) | 501 | WP_012117981.1 | competence type IV pilus minor pilin ComGF | - |
| ACF0HW_RS06715 | comGG | 1298484..1298861 (+) | 378 | WP_012117980.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACF0HW_RS06720 | - | 1298918..1299097 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| ACF0HW_RS06725 | - | 1299137..1299466 (-) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| ACF0HW_RS06730 | tapA | 1299725..1300396 (+) | 672 | WP_012117978.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACF0HW_RS06735 | sipW | 1300368..1300952 (+) | 585 | WP_012117977.1 | signal peptidase I SipW | - |
| ACF0HW_RS06740 | tasA | 1301017..1301802 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| ACF0HW_RS06745 | sinR | 1301850..1302185 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=1060475 ACF0HW_RS06695 WP_042635730.1 1297083..1297349(+) (comGC) [Bacillus amyloliquefaciens strain HN11]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=1060475 ACF0HW_RS06695 WP_042635730.1 1297083..1297349(+) (comGC) [Bacillus amyloliquefaciens strain HN11]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |