Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACF0HW_RS06425 Genome accession   NZ_CP171208
Coordinates   1249016..1249783 (+) Length   255 a.a.
NCBI ID   WP_012118014.1    Uniprot ID   A7Z6U2
Organism   Bacillus amyloliquefaciens strain HN11     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1244016..1254783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS06395 - 1244300..1246432 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  ACF0HW_RS06400 ybeY 1246433..1246906 (+) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  ACF0HW_RS06405 - 1246887..1247261 (+) 375 WP_015240233.1 diacylglycerol kinase family protein -
  ACF0HW_RS06410 - 1247385..1247795 (+) 411 WP_003152976.1 cytidine deaminase -
  ACF0HW_RS06415 era 1247776..1248681 (+) 906 WP_007408285.1 GTPase Era -
  ACF0HW_RS06420 - 1248836..1248979 (+) 144 WP_007408286.1 YqzL family protein -
  ACF0HW_RS06425 recO 1249016..1249783 (+) 768 WP_012118014.1 DNA repair protein RecO Machinery gene
  ACF0HW_RS06430 glyQ 1250085..1250972 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACF0HW_RS06435 glyS 1250965..1253004 (+) 2040 WP_012118013.1 glycine--tRNA ligase subunit beta -
  ACF0HW_RS06440 ccpN 1253105..1253743 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACF0HW_RS06445 - 1253769..1254581 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29310.95 Da        Isoelectric Point: 8.5625

>NTDB_id=1060472 ACF0HW_RS06425 WP_012118014.1 1249016..1249783(+) (recO) [Bacillus amyloliquefaciens strain HN11]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1060472 ACF0HW_RS06425 WP_012118014.1 1249016..1249783(+) (recO) [Bacillus amyloliquefaciens strain HN11]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z6U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886

Multiple sequence alignment