Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AAA980_RS06020 Genome accession   NZ_AP028604
Coordinates   1170118..1170927 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain Pne3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165118..1175927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA980_RS06000 (TKY182805_11880) - 1167464..1168450 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  AAA980_RS06005 (TKY182805_11890) - 1168706..1169482 (-) 777 WP_000731138.1 ion channel -
  AAA980_RS06010 (TKY182805_11900) - 1169529..1169783 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AAA980_RS06015 (TKY182805_11910) - 1169785..1170027 (-) 243 WP_000208080.1 DUF6290 family protein -
  AAA980_RS06020 (TKY182805_11920) vicX 1170118..1170927 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  AAA980_RS06025 (TKY182805_11930) micB 1170929..1172278 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AAA980_RS06030 (TKY182805_11940) micA 1172271..1172975 (-) 705 WP_000722076.1 response regulator YycF Regulator
  AAA980_RS06035 (TKY182805_11950) mutY 1173030..1174205 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  AAA980_RS06040 - 1174302..1174427 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=106044 AAA980_RS06020 WP_001289493.1 1170118..1170927(-) (vicX) [Streptococcus pneumoniae strain Pne3]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=106044 AAA980_RS06020 WP_001289493.1 1170118..1170927(-) (vicX) [Streptococcus pneumoniae strain Pne3]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGTTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment