Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACF1XV_RS05465 Genome accession   NZ_CP171171
Coordinates   1129495..1130100 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Gombe strain S-27606     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124495..1135100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1XV_RS05445 (ACF1XV_05445) - 1124890..1126650 (-) 1761 WP_000156459.1 Lon protease family protein -
  ACF1XV_RS05450 (ACF1XV_05450) matP 1126836..1127288 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ACF1XV_RS05455 (ACF1XV_05455) ompA 1127360..1128412 (-) 1053 WP_001670727.1 porin OmpA -
  ACF1XV_RS05460 (ACF1XV_05460) sulA 1128769..1129278 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  ACF1XV_RS05465 (ACF1XV_05465) sxy/tfoX 1129495..1130100 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ACF1XV_RS05470 (ACF1XV_05470) yccS 1130087..1132240 (-) 2154 WP_080219090.1 YccS family putative transporter -
  ACF1XV_RS05475 (ACF1XV_05475) - 1132259..1132705 (-) 447 WP_001261222.1 YccF domain-containing protein -
  ACF1XV_RS05480 (ACF1XV_05480) helD 1132829..1134883 (+) 2055 WP_000420515.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=1060420 ACF1XV_RS05465 WP_001202375.1 1129495..1130100(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gombe strain S-27606]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1060420 ACF1XV_RS05465 WP_001202375.1 1129495..1130100(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gombe strain S-27606]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGTCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment