Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACFN7Z_RS16170 Genome accession   NZ_CP171157
Coordinates   3288065..3288388 (-) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter sp. P1332     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3283065..3293388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFN7Z_RS16150 (ACFN7Z_16150) - 3283102..3283845 (-) 744 WP_010325727.1 FHA domain-containing protein -
  ACFN7Z_RS16155 (ACFN7Z_16155) gspD 3283933..3286293 (-) 2361 WP_010325726.1 type II secretion system secretin GspD -
  ACFN7Z_RS16160 (ACFN7Z_16160) - 3286333..3287157 (-) 825 WP_010325725.1 type II secretion system protein N -
  ACFN7Z_RS16165 (ACFN7Z_16165) gspN 3287157..3287867 (-) 711 WP_010325724.1 type II secretion system protein N -
  ACFN7Z_RS16170 (ACFN7Z_16170) hns 3288065..3288388 (-) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACFN7Z_RS16175 (ACFN7Z_16175) - 3288540..3288968 (-) 429 WP_010325723.1 thioesterase family protein -
  ACFN7Z_RS16180 (ACFN7Z_16180) - 3288976..3290169 (-) 1194 WP_058952363.1 hypothetical protein -
  ACFN7Z_RS16185 (ACFN7Z_16185) - 3290174..3291016 (-) 843 WP_010325721.1 hypothetical protein -
  ACFN7Z_RS16190 (ACFN7Z_16190) - 3291013..3291792 (-) 780 WP_010325720.1 uroporphyrinogen-III synthase -
  ACFN7Z_RS16195 (ACFN7Z_16195) hemC 3291805..3292725 (-) 921 WP_010325719.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=1060386 ACFN7Z_RS16170 WP_004692786.1 3288065..3288388(-) (hns) [Acinetobacter sp. P1332]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1060386 ACFN7Z_RS16170 WP_004692786.1 3288065..3288388(-) (hns) [Acinetobacter sp. P1332]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAGCAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTTTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86

Multiple sequence alignment