Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   ACF8MK_RS13285 Genome accession   NZ_CP171154
Coordinates   3051150..3051488 (+) Length   112 a.a.
NCBI ID   WP_392538967.1    Uniprot ID   -
Organism   Legionella sp. 227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3046150..3056488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8MK_RS13260 (ACF8MK_13260) acpP 3046955..3047203 (+) 249 WP_003631752.1 acyl carrier protein -
  ACF8MK_RS13265 (ACF8MK_13265) fabF 3047279..3048517 (+) 1239 WP_265704093.1 beta-ketoacyl-ACP synthase II -
  ACF8MK_RS13270 (ACF8MK_13270) mltG 3048518..3049516 (+) 999 WP_392537052.1 endolytic transglycosylase MltG -
  ACF8MK_RS13275 (ACF8MK_13275) tmk 3049516..3050151 (+) 636 WP_392537053.1 dTMP kinase -
  ACF8MK_RS13280 (ACF8MK_13280) - 3050151..3051095 (+) 945 WP_392537054.1 DNA polymerase III subunit -
  ACF8MK_RS13285 (ACF8MK_13285) pilZ 3051150..3051488 (+) 339 WP_392538967.1 PilZ domain-containing protein Machinery gene
  ACF8MK_RS13290 (ACF8MK_13290) - 3051561..3052337 (+) 777 WP_392537055.1 TatD family hydrolase -
  ACF8MK_RS13295 (ACF8MK_13295) - 3052499..3053593 (+) 1095 WP_392537056.1 anhydro-N-acetylmuramic acid kinase -
  ACF8MK_RS13300 (ACF8MK_13300) - 3053807..3055132 (+) 1326 WP_392537057.1 MFS transporter -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12481.31 Da        Isoelectric Point: 5.0806

>NTDB_id=1060344 ACF8MK_RS13285 WP_392538967.1 3051150..3051488(+) (pilZ) [Legionella sp. 227]
MDTTQQINCSFLSESDLYAAYMPFVKGGGLFIRTKTSYPFGSEVKLFIKLMDEDESYVVEGKVIWITPKGAQGNKVPGIG
VQFIGENSRYLSNKIETYLAGMLKSSQFTDTI

Nucleotide


Download         Length: 339 bp        

>NTDB_id=1060344 ACF8MK_RS13285 WP_392538967.1 3051150..3051488(+) (pilZ) [Legionella sp. 227]
ATGGATACAACACAACAAATCAATTGTTCGTTTCTGAGTGAGTCAGATCTTTATGCAGCTTATATGCCTTTTGTCAAAGG
AGGCGGGTTATTTATCCGTACTAAAACAAGCTACCCATTTGGTTCAGAGGTTAAGCTATTTATTAAACTAATGGATGAGG
ATGAATCCTATGTTGTTGAAGGTAAAGTAATCTGGATTACTCCTAAAGGAGCGCAGGGAAATAAAGTACCGGGAATTGGA
GTACAATTTATCGGTGAAAACAGCCGCTATTTGTCTAATAAAATAGAGACCTATTTAGCAGGCATGTTAAAATCCTCTCA
ATTTACAGATACAATTTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(7-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

68.468

99.107

0.679
  pilZ Legionella pneumophila strain ERS1305867

68.468

99.107

0.679

Multiple sequence alignment