Detailed information NTG1060299

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: ACFFRD_RS13605
• Genome accession: NZ_CP171148
• Coordinates: 1866971..1868077 (+)
• Length: 368 a.a.
• NCBI ID: WP_114085264.1
• Uniprot ID: A0A6P1KKZ6
• Organism: Nostoc sp. C110
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1861971..1873077

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFFRD_RS13575	-	1862327..1862839 (-)	513	WP_114085268.1	TIGR02652 family protein	-
ACFFRD_RS13580	-	1863080..1863610 (+)	531	WP_179072673.1	gamma carbonic anhydrase family protein	-
ACFFRD_RS13585	-	1863607..1863732 (+)	126	WP_392481947.1	hypothetical protein	-
ACFFRD_RS13590	-	1863910..1864035 (+)	126	WP_012411301.1	photosystem II protein Y	-
ACFFRD_RS13595	-	1864201..1865496 (+)	1296	WP_392481948.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
ACFFRD_RS13600	-	1865519..1866817 (-)	1299	WP_392481949.1	ABC transporter substrate-binding protein	-
ACFFRD_RS13605	pilM	1866971..1868077 (+)	1107	WP_114085264.1	type IV pilus assembly protein PilM	Machinery gene
ACFFRD_RS13610	-	1868171..1868947 (+)	777	WP_392481951.1	PilN domain-containing protein	-
ACFFRD_RS13615	-	1868944..1869720 (+)	777	WP_114085262.1	pilus assembly protein PilO	-
ACFFRD_RS13620	-	1869878..1872301 (+)	2424	WP_392481952.1	AMIN domain-containing protein	-
ACFFRD_RS13625	-	1872390..1872677 (-)	288	WP_114085260.1	hypothetical protein	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 40652.64 Da
• Isoelectric Point: 4.4545

>NTDB_id=1060299 ACFFRD_RS13605 WP_114085264.1 1866971..1868077(+) (pilM) [Nostoc sp. C110]
MVQKFNRLFGKSNKGVGIELAPERVNVVQLRKQRQGLKLETFTSVAVPEGVVTDGQITDPAAMAQLIQQALAESKIKTTR
VATGVPGRDSIVRIIPVPTELDDKELREMVLNHEAGLYLPYPREEADVDYQKLDYFVDEDGIEKVHVLLVATRKEITDTY
ISTFEQAGLQIDVLEINSFALIRTIREQLRQFGPQEAAVLVDIEFDSTEIAIIVNGVPQFSRTVPIGTYQMQTALARAMS
LPTSRDMELLHGMIIPPTPLDGGKTGVTEIDPGMAAILRVLGELTDELRRSIDFYLNQSENLEVAQILLAGPGGGLQQLD
EFFTQRLSLPTTQIDPIGSLSLEVDTDKYPQVQRSGLAIVLGLGMREV

Nucleotide

• Length: 1107 bp

>NTDB_id=1060299 ACFFRD_RS13605 WP_114085264.1 1866971..1868077(+) (pilM) [Nostoc sp. C110]
GTGGTACAAAAATTCAATCGTCTGTTTGGCAAATCGAATAAAGGGGTCGGCATTGAACTTGCTCCCGAACGGGTAAATGT
GGTTCAGCTACGCAAACAGCGTCAAGGCTTGAAACTAGAAACCTTTACATCGGTAGCAGTTCCAGAAGGCGTAGTTACCG
ATGGTCAAATCACCGATCCCGCAGCAATGGCGCAATTAATCCAGCAGGCGCTAGCTGAAAGCAAAATCAAAACTACTCGT
GTTGCCACCGGTGTACCAGGGCGAGATTCCATCGTTCGGATTATACCTGTACCAACGGAGTTAGATGACAAAGAACTGCG
AGAAATGGTGCTAAACCATGAAGCAGGTTTGTATTTACCCTATCCTCGTGAAGAAGCTGATGTAGATTATCAAAAACTTG
ACTACTTTGTAGATGAGGATGGCATTGAAAAAGTACATGTACTTCTAGTAGCCACTCGCAAGGAAATAACGGATACCTAT
ATAAGTACATTCGAACAGGCAGGACTACAAATTGATGTTTTAGAAATTAACAGTTTTGCCCTGATTAGGACTATTCGTGA
GCAACTGCGACAATTTGGGCCGCAAGAAGCAGCAGTCCTAGTTGATATAGAGTTCGACAGTACAGAAATCGCCATCATTG
TTAACGGAGTACCGCAATTTTCGCGCACAGTGCCCATAGGCACTTATCAAATGCAAACTGCGTTAGCAAGGGCAATGAGC
TTACCCACATCACGAGATATGGAACTGTTACACGGAATGATTATTCCCCCAACTCCCCTAGATGGGGGGAAAACCGGTGT
TACCGAAATCGATCCTGGTATGGCAGCCATATTAAGAGTATTGGGAGAACTAACGGATGAACTGCGCCGTTCAATCGATT
TTTACCTTAATCAAAGTGAAAATTTGGAGGTAGCGCAGATTTTATTAGCTGGACCAGGAGGCGGACTCCAACAGCTAGAT
GAATTCTTTACCCAACGATTGAGCTTGCCAACTACCCAAATAGATCCAATTGGGTCTTTGTCGTTAGAAGTTGACACTGA
TAAATATCCACAGGTACAACGCTCTGGCTTGGCGATTGTACTTGGTCTAGGTATGCGGGAGGTGTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (283-367)

• Type IV pilus assembly protein PilM; (PilM_2) (17-238)

3D structure

• AlphaFold DB: A0A6P1KKZ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Synechocystis sp. PCC 6803	65.94	99.728	0.658