Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFFRD_RS08670 Genome accession   NZ_CP171148
Coordinates   680223..681749 (-) Length   508 a.a.
NCBI ID   WP_392481169.1    Uniprot ID   -
Organism   Nostoc sp. C110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 675223..686749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFFRD_RS08650 - 675890..676798 (+) 909 WP_114081480.1 DUF3365 domain-containing protein -
  ACFFRD_RS08655 - 677084..678334 (-) 1251 WP_392481166.1 protein kinase -
  ACFFRD_RS08660 - 679016..679204 (-) 189 WP_392481167.1 WD40 repeat domain-containing protein -
  ACFFRD_RS08665 - 679374..680099 (-) 726 WP_392481168.1 Uma2 family endonuclease -
  ACFFRD_RS08670 radA 680223..681749 (-) 1527 WP_392481169.1 DNA repair protein RadA Machinery gene
  ACFFRD_RS08675 rpaB 681920..682648 (+) 729 WP_012412029.1 response regulator transcription factor RpaB -
  ACFFRD_RS08680 - 682848..683480 (+) 633 WP_190934740.1 cofactor assembly of complex C subunit B -
  ACFFRD_RS08685 - 683513..684427 (-) 915 WP_392481170.1 M48 family metallopeptidase -
  ACFFRD_RS08690 - 684433..684582 (+) 150 WP_392481171.1 hypothetical protein -
  ACFFRD_RS08695 - 684685..685203 (+) 519 WP_012412032.1 DUF456 domain-containing protein -
  ACFFRD_RS08700 - 685684..686316 (+) 633 WP_392481172.1 PEP-CTERM sorting domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54550.42 Da        Isoelectric Point: 4.9280

>NTDB_id=1060295 ACFFRD_RS08670 WP_392481169.1 680223..681749(-) (radA) [Nostoc sp. C110]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHNKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKPL
SVVNEEKVTVVVDPTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVTDGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTTDDLEPDEDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1060295 ACFFRD_RS08670 WP_392481169.1 680223..681749(-) (radA) [Nostoc sp. C110]
ATGGCAAAGCCAAAAACCTTTTTTACTTGTAATGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGCCCAGCTTG
CGGTACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCCTCAGTAGATGTACCCAGTCGAGGGGGCGTAAGTAGTT
GGCAATCCGCTCAAGGCAATGGCAAATCTCACAATAAACCAGCTAAAGCACGAGCCTCTTTAACATTCGATCAAATTACC
GATCGCCAAATCGCTCGCTGGGAGTCTGGTTATGGAGAATTAGATCGAGTGCTTGGAGGTGGGGTTGTACCTGGCTCTAT
GGTGCTGATTGGTGGCGATCCAGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCTAATCAATTAGCACAGAAATACC
GCATCCTTTACGTAACAGGTGAAGAATCGGGACAGCAAGTAAAATTACGAGCTTCCCGTTTGGGAGTATCAAAACCCCTA
AGTGTGGTTAATGAGGAGAAGGTAACAGTAGTAGTAGATCCTACACTACCCATAGACCCTGACAGTATTGGTGCAGATTT
ATATGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGATTCTCTAAAACCAAATGTGGCGGTGATTGATA
GTATCCAAACGGTGTTTTTTCCGGCGCTGACTTCTGCACCCGGTTCAGTCGCTCAGGTACGAGAATGTACCGCAGCACTG
ATGAAGGTGGCAAAGCACGAAGATGTCACCATGCTGATTGTGGGACACGTTACTAAAGAAGGAGCGATCGCCGGGCCAAA
AGTTTTAGAACATTTAGTAGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGATTATTACGCACAGTTA
AAAACCGCTTCGGTGCAACTCACGAAATCGGCATCTTTGAAATGGTGACAGATGGATTGCGAGAAGTCTCCAATCCCTCA
GAGTTATTTTTAGGCAACCGTGACGATCCAGCGCCAGGTACTGCCATTGTGGTTGCTTGCGAAGGTACTCGCCCCATTGT
TGTAGAATTGCAAGCTTTGGTGAGTCCCACCAGTTACCCTTCTCCTCGACGTGCTGGAACAGGGGTAGACTACAACCGCC
TAGTGCAAATTCTCGCCGTCTTAGAAAAACGCGTAGGAATTCCCATGTCCAAGTTAGATTCCTACGTTGCTTCTGCGGGT
GGCTTGAATGTGGAAGAACCAGCAGTAGATTTAGGAATAGCGATCGCAATCGTTGCCAGTTTCCGCGATCGCATCGTCGA
TCCCGGTACAGTCTTAATCGGTGAAGTTGGGCTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTAAAAG
AAGCTGCTAAGTTGGGATTTAAACGAGCGATTGTGCCAAAAGGGACAAAATTCCCCGATTTAAATATTGAGATATTACCA
GTCTCTAAAGTAATAGATGCGATTATCGCCGCCATTCCGCATCAAGAATTGACAACCGACGATTTAGAACCCGATGAAGA
TGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

KaiC (ATPase)

(90-296)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.405

97.244

0.49
  radA Streptococcus mitis SK321

45.825

96.654

0.443
  radA Streptococcus pneumoniae Rx1

47.335

92.323

0.437
  radA Streptococcus pneumoniae D39

47.335

92.323

0.437
  radA Streptococcus pneumoniae R6

47.335

92.323

0.437
  radA Streptococcus pneumoniae TIGR4

47.335

92.323

0.437
  radA Streptococcus mitis NCTC 12261

47.335

92.323

0.437

Multiple sequence alignment