Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACF3OC_RS00780 Genome accession   NZ_CP171136
Coordinates   178230..179618 (+) Length   462 a.a.
NCBI ID   WP_094257583.1    Uniprot ID   -
Organism   Sphingobacterium cellulitidis strain WGS1282     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 173230..184618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OC_RS00745 (ACF3OC_00745) - 173404..173862 (+) 459 WP_094257577.1 hypothetical protein -
  ACF3OC_RS00750 (ACF3OC_00750) - 173944..175425 (+) 1482 WP_392470671.1 hypothetical protein -
  ACF3OC_RS00755 (ACF3OC_00755) - 175489..175944 (+) 456 WP_392470674.1 sensor histidine kinase -
  ACF3OC_RS00760 (ACF3OC_00760) - 176045..176518 (+) 474 WP_094257579.1 DUF4293 domain-containing protein -
  ACF3OC_RS00765 (ACF3OC_00765) - 176528..177001 (+) 474 WP_094257580.1 hypothetical protein -
  ACF3OC_RS00770 (ACF3OC_00770) - 177025..177654 (-) 630 WP_094257581.1 hypothetical protein -
  ACF3OC_RS00775 (ACF3OC_00775) - 177654..178160 (-) 507 WP_094257582.1 RNA polymerase sigma factor -
  ACF3OC_RS00780 (ACF3OC_00780) radA 178230..179618 (+) 1389 WP_094257583.1 DNA repair protein RadA Machinery gene
  ACF3OC_RS00785 (ACF3OC_00785) - 179670..180794 (-) 1125 WP_094257584.1 TlpA disulfide reductase family protein -
  ACF3OC_RS00790 (ACF3OC_00790) - 180840..181667 (-) 828 WP_094257732.1 YgcG family protein -
  ACF3OC_RS00795 (ACF3OC_00795) - 181672..182106 (-) 435 WP_094257585.1 TPM domain-containing protein -
  ACF3OC_RS00800 (ACF3OC_00800) - 182192..182770 (-) 579 WP_094257586.1 LemA family protein -
  ACF3OC_RS00805 (ACF3OC_00805) - 182922..184469 (+) 1548 WP_094257587.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51091.54 Da        Isoelectric Point: 6.6481

>NTDB_id=1060287 ACF3OC_RS00780 WP_094257583.1 178230..179618(+) (radA) [Sphingobacterium cellulitidis strain WGS1282]
MAKSKSAYFCQSCGYESPKWLGQCPSCKQWNTFVEEVVEKASSRVPEWRSTNTSPGVQKRTNKAAVIHEIVYSEEQRMLS
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPKVKTLYISGEESEQQIKMRAERLQQNSNANCYILTETSM
QNIFKQIDQVEPNVVVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRSVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGIAVAAMLEGLRPLMIEVQALVS
NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVIAALISSQQDIALPSNITFAGE
VGLSGEIRAVNRIEQRIQEAEKLGFEQIFISKYNTKGLDVKRYQILVRPVATLEDVFRILFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1060287 ACF3OC_RS00780 WP_094257583.1 178230..179618(+) (radA) [Sphingobacterium cellulitidis strain WGS1282]
ATGGCAAAATCAAAATCAGCATATTTCTGTCAATCCTGTGGATATGAATCTCCTAAATGGTTAGGACAATGTCCTTCCTG
TAAACAATGGAATACCTTTGTAGAAGAAGTGGTGGAAAAAGCTTCCAGCAGAGTACCTGAATGGCGTAGCACAAATACGA
GCCCTGGAGTACAAAAAAGAACCAATAAAGCAGCCGTCATCCACGAAATTGTCTATTCCGAAGAACAACGCATGTTATCT
CCGGATAAGGAATTCAATAGAGTCCTTGGAGGCGGGATAGTGCCGGGATCTCTGGTGCTTATCGGGGGTGAACCTGGTAT
CGGAAAATCAACCTTGATGCTGCAATTAGCCCTGTCGATTCCAAAAGTTAAAACACTCTATATTTCAGGTGAGGAAAGTG
AACAGCAGATTAAAATGCGTGCTGAACGTTTGCAACAGAACTCCAATGCAAACTGCTATATCCTGACCGAAACCTCCATG
CAGAATATTTTCAAACAGATTGATCAGGTGGAACCAAATGTGGTGGTGATTGACTCCATTCAAACCCTTCATTCCGCACA
AATTGAATCTGCACCCGGATCCGTATCTCAAGTTAGGGAGTGTACTGCTGAATTATTACGATTTGCTAAGGAAACCAACA
CTCCGGTATTTATTGTAGGCCATATCACAAAGGATGGTTCTATTGCAGGACCAAAAGTATTGGAACATATGGTGGATACG
GTATTGCAATTTGAAGGCGATCGAAACCATGTTTATAGAATCTTACGTTCTGTGAAAAACAGGTTCGGCTCTTCTTCTGA
ATTAGGGATATATGAAATGCAAGGCTCAGGTTTACGAGAGGTTTCCAACCCTTCGGAGATCATGCTTTCCCAAAGGGAAG
AACAGGTAAGTGGAATTGCCGTTGCAGCTATGTTAGAAGGTCTGAGGCCGCTGATGATTGAAGTTCAGGCATTGGTGTCC
AATTCTGCTTACGGAACCCCACAACGGAGCTCTACAGGTTTCGATACCAAAAGATTAAATATGCTCCTAGCAGTGCTAGA
GAAACGCTTTGGATTCCGCTTAAGTGCTCAGGATGTATTCTTGAATATCGCCGGTGGATTGAGAGTGGAAGATCCTGCCA
TTGACCTCGCAGTCATTGCAGCCCTGATCTCCTCCCAACAAGATATCGCACTCCCTTCTAATATTACTTTTGCAGGCGAA
GTAGGCCTTTCAGGTGAGATACGTGCTGTAAATCGAATTGAACAACGAATTCAAGAAGCTGAGAAACTAGGCTTTGAACA
GATCTTTATATCTAAATATAATACCAAAGGACTCGATGTTAAAAGATACCAGATATTGGTAAGACCAGTTGCAACCCTGG
AAGATGTCTTTCGAATCCTATTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-434)

AAA domain (AAA_25)

(80-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.233

100

0.535
  radA Streptococcus pneumoniae Rx1

49.351

100

0.494
  radA Streptococcus pneumoniae D39

49.351

100

0.494
  radA Streptococcus pneumoniae R6

49.351

100

0.494
  radA Streptococcus pneumoniae TIGR4

49.351

100

0.494
  radA Streptococcus mitis NCTC 12261

49.351

100

0.494
  radA Streptococcus mitis SK321

49.351

100

0.494

Multiple sequence alignment