Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACF3M1_RS06325 Genome accession   NZ_CP171131
Coordinates   1391641..1393017 (+) Length   458 a.a.
NCBI ID   WP_394004738.1    Uniprot ID   -
Organism   Luteimonas sp. WGS1318     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1386641..1398017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3M1_RS06300 (ACF3M1_06300) - 1388310..1389424 (+) 1115 WP_394003244.1 IS3 family transposase -
  ACF3M1_RS06305 (ACF3M1_06305) - 1389402..1389905 (-) 504 WP_394004737.1 P-loop NTPase fold protein -
  ACF3M1_RS06310 (ACF3M1_06310) ispH 1390056..1390211 (+) 156 Protein_1247 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACF3M1_RS06320 (ACF3M1_06320) - 1390425..1391504 (-) 1080 WP_394005201.1 glycerophosphodiester phosphodiesterase -
  ACF3M1_RS06325 (ACF3M1_06325) radA 1391641..1393017 (+) 1377 WP_394004738.1 DNA repair protein RadA Machinery gene
  ACF3M1_RS06330 (ACF3M1_06330) - 1393044..1393616 (+) 573 WP_394004739.1 hypothetical protein -
  ACF3M1_RS06335 (ACF3M1_06335) - 1393654..1394328 (+) 675 WP_394004740.1 hypothetical protein -
  ACF3M1_RS06340 (ACF3M1_06340) - 1394345..1395919 (-) 1575 WP_394004741.1 DHA2 family efflux MFS transporter permease subunit -
  ACF3M1_RS06345 (ACF3M1_06345) - 1395942..1397141 (-) 1200 WP_394004742.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48138.37 Da        Isoelectric Point: 6.9041

>NTDB_id=1060279 ACF3M1_RS06325 WP_394004738.1 1391641..1393017(+) (radA) [Luteimonas sp. WGS1318]
MAKARTAYVCSECGADFNKWQGQCSACGAWDTIAEIVLESAVAAKSPASRRSGWAGKIDAPKVMALKDVQQGEDVRVSTG
IGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQALAQMAGTLPGLYVTGEESLAQVAGRAVRLGLSLDGLHALAETGIE
RILQHASELRPKLIIADSIQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDAV
LYFEGDSGSRFRVMRAFKNRFGAVNELGVFAMGDKGLKEVPNPSAIFLSGGSTPQPGSCVMVTREGTRPLLVEVQALVDA
SPLSNPRRVAVGMEGNRLAMLLAVLHRHGGIMTGDQDVFVNVVGGIRVQETAADLPVLLSVLSSLRDAPLPDKTIAFGEV
GLSGEIRPVPNGEERLREAATHGFKRAIVAKANAPKTGSFKGMEVIGVERLAEALEHI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1060279 ACF3M1_RS06325 WP_394004738.1 1391641..1393017(+) (radA) [Luteimonas sp. WGS1318]
ATGGCAAAGGCTAGGACGGCATACGTCTGCAGTGAATGCGGCGCCGATTTCAACAAGTGGCAGGGGCAGTGCAGTGCCTG
CGGGGCCTGGGACACGATCGCCGAGATCGTGCTGGAGAGTGCGGTGGCCGCGAAGTCGCCCGCCTCGCGCCGCAGCGGCT
GGGCCGGGAAGATCGACGCGCCCAAGGTCATGGCGCTCAAGGACGTGCAGCAGGGCGAGGACGTGCGCGTGTCGACCGGC
ATCGGCGAGTTCGATCGTGTGCTCGGCGGCGGACTCGTCGAAGGCGCCGTCGTACTGGTCGGCGGCGATCCGGGCATCGG
CAAGTCGACCCTGCTGTTGCAGGCGCTGGCGCAGATGGCGGGCACGCTGCCGGGCCTGTACGTCACCGGCGAAGAATCAT
TGGCGCAGGTCGCGGGTCGCGCGGTGCGCCTCGGGCTGTCGCTCGACGGCCTGCACGCGCTGGCCGAGACCGGCATCGAA
CGCATCCTGCAGCACGCCTCGGAGCTGCGACCGAAGCTGATCATCGCCGACTCGATCCAGACCCTGTGGACCGAATCGCT
GACCGCAGCGCCGGGCTCGGTGAGTCAGGTCCGCGAATCCGCCGCGCGTCTCGTGCGTTACGCCAAGGAAACCGGCACGG
CCGTGTTCCTCGTCGGCCATGTGACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCGGTG
CTGTATTTCGAAGGCGACAGCGGCAGCCGCTTCCGGGTCATGCGTGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACT
CGGCGTGTTCGCGATGGGCGACAAGGGTCTGAAGGAAGTGCCGAACCCGTCGGCGATCTTCCTGTCCGGCGGCAGCACGC
CGCAGCCCGGCAGCTGCGTGATGGTCACGCGCGAAGGCACGCGGCCGTTGCTGGTCGAAGTGCAGGCGCTGGTGGATGCC
TCGCCACTGTCGAATCCGCGCCGCGTCGCGGTGGGCATGGAAGGCAACCGGTTGGCGATGCTGCTGGCGGTGCTGCATCG
CCACGGCGGGATCATGACCGGCGACCAGGACGTGTTCGTCAACGTCGTCGGCGGCATCCGCGTGCAGGAAACCGCGGCGG
ATCTGCCGGTGCTGCTGTCGGTGCTGTCGTCACTGCGCGACGCGCCGCTGCCGGACAAGACGATCGCGTTCGGCGAAGTG
GGCTTGAGCGGCGAGATCCGGCCCGTACCCAACGGCGAGGAGCGGTTGCGCGAGGCGGCAACGCACGGCTTCAAACGCGC
GATCGTCGCGAAAGCGAACGCACCGAAGACCGGCAGCTTCAAGGGCATGGAGGTCATCGGCGTCGAGCGTCTGGCCGAGG
CGCTGGAGCACATCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(77-262)

Subunit ChlI of Mg-chelatase (ChlI)

(350-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.578

99.782

0.485
  radA Streptococcus mitis NCTC 12261

42.795

100

0.428
  radA Streptococcus pneumoniae Rx1

42.795

100

0.428
  radA Streptococcus pneumoniae D39

42.795

100

0.428
  radA Streptococcus pneumoniae R6

42.795

100

0.428
  radA Streptococcus pneumoniae TIGR4

42.795

100

0.428
  radA Streptococcus mitis SK321

42.576

100

0.426

Multiple sequence alignment