Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACF3NL_RS04095 Genome accession   NZ_CP171118
Coordinates   887369..889183 (-) Length   604 a.a.
NCBI ID   WP_208958510.1    Uniprot ID   -
Organism   Dolosigranulum pigrum strain WGS1517     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 882369..894183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NL_RS04060 (ACF3NL_04060) - 882563..883027 (+) 465 WP_392425403.1 GNAT family N-acetyltransferase -
  ACF3NL_RS04065 (ACF3NL_04065) - 883020..883472 (+) 453 WP_208958506.1 GNAT family N-acetyltransferase -
  ACF3NL_RS04070 (ACF3NL_04070) - 883514..884413 (-) 900 WP_208958507.1 RluA family pseudouridine synthase -
  ACF3NL_RS04075 (ACF3NL_04075) - 884403..885215 (-) 813 WP_208958508.1 NAD kinase -
  ACF3NL_RS04080 (ACF3NL_04080) - 885217..885846 (-) 630 WP_004636717.1 GTP pyrophosphokinase family protein -
  ACF3NL_RS04085 (ACF3NL_04085) - 885939..886526 (+) 588 WP_208958509.1 CYTH domain-containing protein -
  ACF3NL_RS04090 (ACF3NL_04090) - 886620..887246 (+) 627 WP_004636719.1 DsbA family protein -
  ACF3NL_RS04095 (ACF3NL_04095) pepF 887369..889183 (-) 1815 WP_208958510.1 oligoendopeptidase F Regulator
  ACF3NL_RS04100 (ACF3NL_04100) - 889329..890441 (-) 1113 WP_392425408.1 competence protein CoiA -
  ACF3NL_RS04105 (ACF3NL_04105) - 890544..891188 (-) 645 WP_077862708.1 adaptor protein MecA -
  ACF3NL_RS04110 (ACF3NL_04110) - 891291..891683 (-) 393 WP_004636723.1 ArsC/Spx/MgsR family protein -
  ACF3NL_RS04115 (ACF3NL_04115) - 891708..892727 (-) 1020 WP_004636724.1 lipoate--protein ligase -
  ACF3NL_RS04120 (ACF3NL_04120) - 893003..893137 (-) 135 WP_280115919.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69457.30 Da        Isoelectric Point: 4.5104

>NTDB_id=1060200 ACF3NL_RS04095 WP_208958510.1 887369..889183(-) (pepF) [Dolosigranulum pigrum strain WGS1517]
MSDTKQLPKRHEVEEAKTWDLTTIYESDEAWEQDFEAIDDLKDKFVNFQGTLGDGADNFLAAFETLLDLNRKLSKLFVYS
HLKSDQDTENSTYQTLNDRARLKYAEVAEARSWFTPELLSLSQETIDQYFVEVEGLQPYKHEIETILADRDHVLSAEKEA
LLAGASDILSSGSQTFSMLNNADIEFPTVTNEEGEKVQLSHGLYGELIQSTDRSVRQEAFKKMYEVYKGLNNTFASTLQS
DVKKNNYLARVHHYDSARHQALSNNHIPESVHDTLLEVVNENLPLLHRYMALRKELLGLDELHMYDLYPPITGDDSLEYS
FEEAKEATYKGLSVLGDEYKAILDKAFNERWIDVVENKGKRSGAYSSGMYDTNPFILLNWHDSLNHLYTLVHELGHSAHS
YFTRNNQPYVYGDYSIFLAEIASTTNENLLTDYLLKKADSPEEKALILSQYLDGFKGTVFRQTQFAEFEHKIHTAAQEKQ
PLTADFLNKTYAEINDKFYGDVVVNDEEIQYEWSRIPHFYMGYYVYQYSTGFCAATALADKILNEEEGALDAYLGYLKSG
SSDYPIEVMKKAGLDMTNKDYLQRAMDVFEQRLNQLEEVVKEIK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1060200 ACF3NL_RS04095 WP_208958510.1 887369..889183(-) (pepF) [Dolosigranulum pigrum strain WGS1517]
ATGTCAGACACAAAACAATTACCAAAACGTCATGAAGTAGAAGAAGCAAAAACATGGGACTTAACAACCATTTATGAAAG
TGATGAAGCTTGGGAGCAGGATTTTGAAGCGATTGATGACTTGAAAGATAAGTTTGTCAACTTCCAAGGTACTTTGGGTG
ACGGGGCCGATAATTTTCTAGCAGCATTTGAGACATTATTGGATCTGAATCGTAAGTTGAGTAAACTCTTTGTATACTCA
CACTTAAAAAGTGATCAAGATACTGAAAATTCAACGTATCAGACTCTTAATGATCGCGCACGCTTGAAATATGCTGAAGT
TGCAGAAGCACGGTCTTGGTTTACGCCAGAATTGCTATCACTCTCACAAGAGACGATTGATCAGTACTTTGTTGAAGTAG
AAGGGCTGCAACCTTACAAACATGAGATTGAAACTATTTTAGCTGATCGAGATCATGTCTTAAGCGCTGAGAAAGAAGCA
TTATTGGCTGGGGCTAGCGATATTTTATCATCTGGAAGCCAAACCTTCTCGATGTTAAATAATGCCGATATTGAATTTCC
AACAGTGACGAATGAAGAAGGCGAGAAAGTTCAATTATCACACGGTTTATACGGAGAGTTGATTCAAAGCACGGATCGAT
CAGTACGCCAGGAAGCCTTCAAGAAAATGTATGAAGTCTACAAAGGCTTAAATAATACATTCGCGTCAACGCTTCAGAGC
GATGTGAAGAAAAATAATTATTTAGCACGTGTGCACCATTACGATTCAGCGCGCCATCAAGCATTATCGAACAATCACAT
TCCAGAGAGCGTGCATGATACCTTGTTAGAAGTGGTAAATGAGAACTTACCGCTCTTACACCGTTATATGGCGTTACGTA
AGGAATTACTGGGTCTTGATGAGTTGCATATGTATGATTTATACCCACCGATTACGGGGGATGATAGCTTAGAGTACTCA
TTTGAAGAAGCAAAAGAGGCAACATACAAAGGGTTAAGTGTATTGGGTGATGAGTACAAAGCGATTTTAGATAAAGCATT
CAATGAGCGTTGGATTGATGTGGTTGAGAATAAAGGGAAGCGCAGTGGAGCGTATTCATCAGGAATGTATGATACGAATC
CGTTTATCTTGCTGAACTGGCATGATTCTTTAAATCACTTATACACCTTAGTACACGAACTGGGACATAGTGCGCACAGT
TACTTCACGCGCAACAATCAGCCGTATGTGTATGGGGACTATTCGATCTTCTTAGCTGAGATCGCCAGCACTACAAACGA
GAATCTATTAACAGATTATCTCTTGAAAAAAGCTGACTCACCTGAAGAAAAAGCTCTCATTCTAAGCCAATATTTAGATG
GATTCAAGGGAACAGTCTTCCGTCAGACACAATTTGCTGAATTCGAGCACAAGATTCACACCGCAGCGCAAGAGAAACAA
CCATTGACTGCTGATTTCTTAAATAAAACCTATGCAGAGATTAATGATAAGTTTTATGGCGATGTTGTAGTTAATGATGA
AGAGATCCAATATGAATGGTCGCGTATTCCGCACTTCTATATGGGTTACTATGTATATCAATACTCAACTGGTTTCTGTG
CAGCTACGGCGTTAGCGGACAAAATCTTAAATGAAGAAGAAGGTGCGCTAGATGCGTACTTAGGTTACTTGAAATCCGGT
AGTAGCGATTATCCGATCGAAGTGATGAAAAAAGCTGGTCTCGACATGACGAACAAAGATTACTTGCAACGAGCGATGGA
TGTCTTCGAACAACGCTTGAACCAGCTAGAGGAAGTTGTTAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.344

0.528

Multiple sequence alignment