Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACF3OH_RS07790 Genome accession   NZ_CP171117
Coordinates   1475152..1477533 (-) Length   793 a.a.
NCBI ID   WP_392453952.1    Uniprot ID   -
Organism   Chryseomicrobium aureum strain WGS1526     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1470152..1482533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OH_RS07770 (ACF3OH_07770) - 1471154..1471465 (-) 312 WP_204590237.1 DUF1292 domain-containing protein -
  ACF3OH_RS07775 (ACF3OH_07775) ruvX 1471476..1471895 (-) 420 WP_392453950.1 Holliday junction resolvase RuvX -
  ACF3OH_RS07780 (ACF3OH_07780) - 1471888..1472163 (-) 276 WP_204590239.1 IreB family regulatory phosphoprotein -
  ACF3OH_RS07785 (ACF3OH_07785) alaS 1472238..1474865 (-) 2628 WP_392453951.1 alanine--tRNA ligase -
  ACF3OH_RS07790 (ACF3OH_07790) recD2 1475152..1477533 (-) 2382 WP_392453952.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACF3OH_RS07795 (ACF3OH_07795) - 1477550..1478206 (-) 657 WP_392453953.1 tetratricopeptide repeat protein -
  ACF3OH_RS07800 (ACF3OH_07800) mnmA 1478214..1479326 (-) 1113 WP_204590243.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACF3OH_RS07805 (ACF3OH_07805) - 1479332..1480483 (-) 1152 WP_392453955.1 cysteine desulfurase family protein -
  ACF3OH_RS07810 (ACF3OH_07810) cymR 1480496..1480918 (-) 423 WP_204590245.1 cysteine metabolism transcriptional regulator CymR -
  ACF3OH_RS07815 (ACF3OH_07815) - 1481053..1482339 (+) 1287 WP_392453957.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 88206.99 Da        Isoelectric Point: 4.9555

>NTDB_id=1060172 ACF3OH_RS07790 WP_392453952.1 1475152..1477533(-) (recD2) [Chryseomicrobium aureum strain WGS1526]
MTERNEDKLFVSGRPIVSIFHNEDNLYSILKVKIKSTNTTYTDKEGIIVGYFPKLSTDESYTFYGQLKNHPRYGQQFAVD
TFVRDKPDSVKGVVHYLSSDLFPGIGPKTAQTIVKKLGENALQKILDSPDVLKTIPRLTKEKRDTIINGLQQNHGMERIM
VQLNEWGFGPQLSMKIYQNYREETLEKLNDNPYRLIEDVEGVGFGRADELGSQLGIEGSHMDRMKAGILYLLNQASLSEG
HIFVPTDQLLEDVKQLLEKSQAVEMEYDALAKAVIELGEESKVVVEQNRVYMPSLYFSEVGIATKTERLVQAKFKGFKKK
LINESLSSIEADFGVTYAPTQRKAIEMALNNQISILTGGPGTGKTTVVRAIVELYADLNGLSLDPKEWAKEGKPFPIALA
APTGRAAKRLSESTGLPAMTIHRLLGFTGQDTEDTEGRPVEASLIIIDETSMLDCWLAHQLLRAIPETSQVVLVGDQDQL
PPVGPGQVLKDLLASGRLPVVELQDIYRQADGSSIIELAHAMKSGKTTQDLLSKTKDRSFIPASADQIPKVVEQVVSSAL
AKGFTIRDLQVLAPMYRGPAGIDALNKMIQEMVNANPDGTRKEMVFGDAVYRIGDKVLQLVNQPESNVFNGDMGEVISIF
KANENVEKKELMIVSFDGIEVTYEKSDLGQLTLAYCCSVHKSQGSEFSMVILPITRGYMKMLRRNLLYTAITRAKNYLIL
CGDPQAFQIGIERNDDNLRFTTLIERLSPEAEPMEPVEGQTYELTEDTLLSINPMIGMEGITPHQFMTQDVDS

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=1060172 ACF3OH_RS07790 WP_392453952.1 1475152..1477533(-) (recD2) [Chryseomicrobium aureum strain WGS1526]
ATGACGGAACGAAATGAGGACAAATTGTTTGTTTCGGGTCGGCCGATTGTCTCCATTTTTCATAATGAAGATAATCTGTA
CTCGATTTTGAAAGTGAAAATCAAATCGACAAACACTACATATACCGATAAAGAAGGAATTATAGTCGGCTATTTTCCAA
AACTATCGACAGACGAAAGTTATACATTTTATGGGCAATTAAAAAATCATCCGAGGTACGGACAACAATTTGCTGTGGAT
ACATTTGTCCGGGACAAACCAGATTCCGTAAAAGGCGTCGTGCATTATTTGTCATCCGATCTCTTTCCGGGTATTGGTCC
TAAAACCGCGCAGACTATTGTCAAAAAGCTCGGCGAAAATGCGCTCCAAAAAATATTGGATTCTCCAGATGTTTTAAAGA
CGATTCCTCGACTGACAAAAGAAAAACGGGATACCATTATAAACGGCTTGCAACAGAATCACGGGATGGAACGCATCATG
GTACAACTCAATGAATGGGGCTTCGGTCCACAGTTGTCTATGAAAATTTACCAAAACTACCGAGAAGAAACGCTTGAAAA
ATTAAACGACAATCCCTACCGTCTCATTGAAGATGTAGAAGGGGTCGGCTTTGGTCGGGCAGATGAACTCGGGTCACAAC
TCGGAATCGAAGGCAGTCATATGGACCGCATGAAGGCGGGAATTTTGTATCTTTTAAATCAGGCATCTTTATCAGAAGGG
CACATTTTTGTCCCAACTGACCAATTGCTAGAGGATGTGAAACAACTTCTCGAAAAATCGCAAGCAGTTGAGATGGAGTA
TGACGCACTTGCAAAAGCTGTGATAGAGCTTGGGGAAGAGAGTAAAGTCGTCGTTGAGCAGAACCGTGTGTATATGCCGT
CGCTCTACTTTTCAGAAGTTGGAATCGCAACGAAAACAGAACGTCTTGTACAAGCGAAATTCAAAGGCTTTAAAAAGAAG
TTGATTAACGAATCGTTGTCTTCGATTGAAGCGGACTTTGGTGTAACCTATGCACCTACTCAACGAAAAGCGATTGAAAT
GGCGCTTAACAATCAAATTTCGATTCTGACAGGTGGACCTGGAACGGGGAAAACGACGGTCGTTCGCGCCATCGTCGAAC
TGTATGCAGACCTCAACGGCTTATCACTGGACCCTAAAGAGTGGGCGAAAGAAGGCAAACCGTTCCCGATTGCTTTGGCG
GCTCCGACCGGACGGGCTGCCAAGCGGCTGAGTGAATCCACGGGACTTCCCGCGATGACGATTCATCGGTTGCTTGGCTT
TACCGGACAGGATACGGAAGACACAGAAGGGCGACCGGTCGAAGCAAGTCTTATTATTATTGATGAGACATCAATGCTTG
ATTGCTGGCTTGCGCATCAACTCCTTCGTGCTATTCCAGAAACTTCACAGGTCGTCCTAGTTGGGGACCAAGACCAGCTT
CCACCTGTAGGGCCGGGACAAGTTTTAAAAGATCTACTTGCTAGTGGACGCCTGCCTGTTGTTGAACTTCAAGACATTTA
TCGCCAAGCAGACGGGTCGTCGATCATTGAGTTAGCCCATGCGATGAAATCTGGGAAGACGACGCAAGATTTGCTCTCTA
AAACGAAAGACCGTTCGTTCATACCAGCGTCCGCGGACCAAATTCCGAAAGTCGTCGAACAGGTCGTCTCCAGTGCACTC
GCGAAAGGATTCACCATTCGGGACCTTCAAGTATTAGCGCCGATGTATAGAGGACCTGCTGGCATTGATGCGCTCAATAA
AATGATTCAAGAAATGGTCAACGCCAACCCAGATGGTACGCGAAAAGAAATGGTATTTGGAGATGCTGTATACCGTATCG
GAGATAAAGTGCTTCAACTCGTCAATCAACCGGAATCGAATGTATTTAACGGGGATATGGGGGAAGTCATCAGTATTTTC
AAAGCGAACGAAAATGTAGAGAAAAAAGAGCTTATGATCGTTTCCTTTGATGGAATTGAAGTGACGTATGAAAAATCCGA
TCTTGGCCAATTAACGCTTGCGTACTGTTGTTCCGTTCATAAATCTCAGGGCAGTGAGTTCTCGATGGTCATTTTGCCGA
TTACCCGTGGATATATGAAAATGCTACGACGCAATCTTCTCTATACAGCTATTACACGCGCGAAAAACTACTTGATTTTA
TGCGGAGATCCACAAGCATTCCAAATCGGAATCGAACGCAATGATGACAACTTACGGTTCACAACATTGATTGAGCGACT
GTCTCCTGAAGCCGAGCCAATGGAACCTGTCGAAGGACAAACGTATGAGTTGACGGAAGATACACTCCTTTCCATCAATC
CGATGATTGGTATGGAGGGAATTACACCACATCAATTTATGACCCAAGACGTTGACAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-656)

AAA domain (AAA_30)

(337-543)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.594

100

0.536

Multiple sequence alignment