Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACF3OH_RS03030 Genome accession   NZ_CP171117
Coordinates   546059..547012 (+) Length   317 a.a.
NCBI ID   WP_392455761.1    Uniprot ID   -
Organism   Chryseomicrobium aureum strain WGS1526     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541059..552012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OH_RS03015 (ACF3OH_03015) - 541894..542631 (+) 738 WP_392455759.1 VOC family protein -
  ACF3OH_RS03020 (ACF3OH_03020) hflX 542643..543908 (+) 1266 WP_392455760.1 GTPase HflX -
  ACF3OH_RS03025 (ACF3OH_03025) - 544134..545873 (-) 1740 WP_204590590.1 ABC transporter ATP-binding protein -
  ACF3OH_RS03030 (ACF3OH_03030) ceuB 546059..547012 (+) 954 WP_392455761.1 ABC transporter permease Machinery gene
  ACF3OH_RS03035 (ACF3OH_03035) - 547005..547955 (+) 951 WP_392455763.1 iron chelate uptake ABC transporter family permease subunit -
  ACF3OH_RS03040 (ACF3OH_03040) - 547952..548716 (+) 765 WP_392455765.1 ABC transporter ATP-binding protein -
  ACF3OH_RS03045 (ACF3OH_03045) - 548731..549696 (+) 966 WP_392455767.1 siderophore ABC transporter substrate-binding protein -
  ACF3OH_RS03050 (ACF3OH_03050) - 549699..550007 (+) 309 WP_204590594.1 antibiotic biosynthesis monooxygenase -
  ACF3OH_RS03055 (ACF3OH_03055) - 550105..550716 (+) 612 WP_204590595.1 phosphatase PAP2 family protein -
  ACF3OH_RS03060 (ACF3OH_03060) - 550718..551371 (+) 654 WP_392455769.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34926.24 Da        Isoelectric Point: 10.2151

>NTDB_id=1060159 ACF3OH_RS03030 WP_392455761.1 546059..547012(+) (ceuB) [Chryseomicrobium aureum strain WGS1526]
MLKLRYMVLLTFGLAILSLFIGVSRVTPVDLLDIQSEETQIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTT
AGTLDATRLGILVSMLLFANASMVEKMLVAFLFALAGTFLFMQILDRIKFKDAIFIPLIGMMFGNILSSVTTFFAYRADV
IQNMSAWLQGDFSLMMKGRYELLYISIPVLILAYLYANKFTVAGMGEDFSKNLGLSYKRVVNLGLVLVALITATVVLTVG
MIPFLGLIIPNIVSLFNGDHLRKTLPLTALLGASFLLFADILGRVIIYPYEISISLMVGVLGSGIFLYLLWRGRKHA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1060159 ACF3OH_RS03030 WP_392455761.1 546059..547012(+) (ceuB) [Chryseomicrobium aureum strain WGS1526]
ATGTTGAAATTACGTTACATGGTACTCCTGACCTTTGGATTAGCGATTCTTTCGCTGTTCATTGGCGTGAGTAGAGTCAC
CCCAGTCGATTTACTGGATATTCAATCCGAAGAGACACAAATCTTCTTGATCAGTCGAGTTCCGCGACTCGTTGCCATTT
TACTAGCAGGTGCTGGGATGAGTATTGCGGGATTGATTATGCAGCAGTTGAGTCGCAATAAATTTGTATCACCAACTACA
GCAGGGACACTCGATGCTACGCGCCTAGGAATTCTTGTATCGATGCTGTTGTTTGCGAACGCTTCAATGGTTGAGAAAAT
GCTGGTCGCATTTCTATTTGCGCTAGCAGGTACATTTTTATTTATGCAAATCCTCGACCGAATCAAGTTCAAAGACGCGA
TTTTCATTCCACTCATCGGGATGATGTTCGGCAATATCCTATCGTCTGTCACGACTTTTTTTGCCTATCGGGCAGATGTC
ATTCAAAATATGTCGGCATGGCTTCAGGGAGATTTCTCTCTCATGATGAAAGGGAGATATGAACTTTTATACATAAGCAT
TCCTGTCCTCATCCTCGCGTATTTGTATGCCAATAAGTTCACGGTTGCCGGGATGGGGGAGGACTTCTCCAAAAACTTAG
GCTTGTCTTATAAACGAGTAGTGAACCTAGGACTTGTCCTTGTTGCACTGATTACAGCAACTGTGGTTTTAACGGTCGGG
ATGATTCCGTTCTTAGGACTTATTATTCCGAATATCGTTTCCCTGTTTAACGGGGATCATTTGCGGAAGACTTTACCTCT
TACAGCCTTACTAGGTGCGAGTTTTCTGTTGTTCGCAGATATTTTAGGACGCGTCATCATTTATCCCTATGAGATTTCGA
TCAGTTTGATGGTCGGTGTACTAGGAAGCGGTATCTTCCTCTATCTGCTATGGAGGGGGAGAAAACATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(12-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment