Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ACF3NW_RS10545 Genome accession   NZ_CP171110
Coordinates   2058431..2058604 (-) Length   57 a.a.
NCBI ID   WP_392423323.1    Uniprot ID   -
Organism   Eikenella halliae strain WGS1533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2053431..2063604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NW_RS10535 (ACF3NW_10535) - 2054299..2054868 (-) 570 WP_314252726.1 hypothetical protein -
  ACF3NW_RS10540 (ACF3NW_10540) smc 2054865..2058347 (-) 3483 WP_314252724.1 chromosome segregation protein SMC -
  ACF3NW_RS10545 (ACF3NW_10545) recC 2058431..2058604 (-) 174 WP_392423323.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ACF3NW_RS10550 (ACF3NW_10550) - 2058671..2058994 (-) 324 WP_314252720.1 hypothetical protein -
  ACF3NW_RS10555 (ACF3NW_10555) - 2059096..2059728 (-) 633 WP_314252718.1 hypothetical protein -
  ACF3NW_RS10560 (ACF3NW_10560) - 2059925..2060803 (+) 879 WP_314252716.1 M23 family metallopeptidase -
  ACF3NW_RS10565 (ACF3NW_10565) - 2060843..2061286 (+) 444 WP_314252714.1 polymer-forming cytoskeletal protein -
  ACF3NW_RS10570 (ACF3NW_10570) - 2061809..2062099 (+) 291 WP_206501469.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6660.75 Da        Isoelectric Point: 10.2178

>NTDB_id=1060126 ACF3NW_RS10545 WP_392423323.1 2058431..2058604(-) (recC) [Eikenella halliae strain WGS1533]
MLHPYQSNRLELLADVMLSVKNKHPLPNPLATEHIVVQSQGMRRHIHQFWARHLGVD

Nucleotide


Download         Length: 174 bp        

>NTDB_id=1060126 ACF3NW_RS10545 WP_392423323.1 2058431..2058604(-) (recC) [Eikenella halliae strain WGS1533]
ATGCTCCACCCCTACCAATCCAACCGACTCGAATTGCTGGCCGACGTGATGCTGTCGGTGAAGAACAAACACCCCCTGCC
CAACCCGTTGGCCACCGAGCATATTGTGGTGCAGAGTCAAGGCATGCGCCGCCATATCCACCAGTTTTGGGCGCGGCATT
TGGGCGTTGACTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

51.786

98.246

0.509

Multiple sequence alignment