Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACF3NW_RS09370 Genome accession   NZ_CP171110
Coordinates   1824057..1825493 (-) Length   478 a.a.
NCBI ID   WP_314252211.1    Uniprot ID   -
Organism   Eikenella halliae strain WGS1533     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1819057..1830493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NW_RS09350 (ACF3NW_09350) - 1819218..1819655 (-) 438 WP_314252142.1 hypothetical protein -
  ACF3NW_RS09355 (ACF3NW_09355) - 1819862..1820269 (-) 408 WP_314252143.1 hypothetical protein -
  ACF3NW_RS09360 (ACF3NW_09360) aroA 1820709..1822001 (-) 1293 WP_392423302.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  ACF3NW_RS09365 (ACF3NW_09365) recN 1822283..1823947 (-) 1665 WP_392423303.1 DNA repair protein RecN -
  ACF3NW_RS09370 (ACF3NW_09370) pilA 1824057..1825493 (-) 1437 WP_314252211.1 signal recognition particle-docking protein FtsY Machinery gene
  ACF3NW_RS09375 (ACF3NW_09375) - 1825620..1825988 (-) 369 WP_064089949.1 roadblock/LC7 domain-containing protein -
  ACF3NW_RS09380 (ACF3NW_09380) - 1826012..1826671 (-) 660 WP_003824087.1 roadblock/LC7 domain-containing protein -
  ACF3NW_RS09385 (ACF3NW_09385) - 1826674..1827210 (-) 537 WP_064089950.1 ATP/GTP-binding protein -
  ACF3NW_RS09390 (ACF3NW_09390) - 1827222..1828349 (-) 1128 WP_314252154.1 hypothetical protein -
  ACF3NW_RS09395 (ACF3NW_09395) - 1828353..1829861 (-) 1509 WP_314252156.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 50423.71 Da        Isoelectric Point: 4.3001

>NTDB_id=1060119 ACF3NW_RS09370 WP_314252211.1 1824057..1825493(-) (pilA) [Eikenella halliae strain WGS1533]
MVFGFFRKRKAQPAAPQQETELVQAVEEAVQTEEVAAQPASETAEQAAAQAPDDAMPAAESDSTDLANGTSAHKTASTEV
VSAEAAPVPPEILPEQGLATTQTDETANALPIVETAEQAMGETSAAKAEEAAAFDEHDPDGQANNEQAVSEPVAVESVVP
SSTDQAAIEPAPEQPAALGWAARLRQGLSKSRQQMAKSLASVFGGGKIDEDLYEELETVLLTSDMGIEATEHLMEEVRQR
VSLRGLKDGEELRGALKEAIYELIKPLEQPLTLPADKRPFVIMLAGINGAGKTTSIGKLAKYFQGQGKSVLLAAGDTFRA
AAREQLAEWGERNGVTVISQASGDSAAVCFDAVEAAKARGIDIVLADTAGRLPTQTHLMEEIKKVKRVLQKSMPDAPHEI
VVVLDANIGQNAVNQVIAFDDALGLTGLIVTKLDGTAKGGVLAALASRRPVPVRFIGVGEGIDDLRPFNAREFVDALL

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=1060119 ACF3NW_RS09370 WP_314252211.1 1824057..1825493(-) (pilA) [Eikenella halliae strain WGS1533]
ATGGTATTTGGATTTTTTAGAAAGCGCAAAGCGCAACCTGCCGCCCCGCAACAGGAAACCGAGTTGGTACAGGCGGTTGA
AGAAGCAGTGCAAACCGAAGAGGTTGCGGCACAACCGGCCTCAGAAACCGCAGAGCAAGCCGCTGCCCAAGCGCCGGATG
ATGCAATGCCTGCGGCCGAATCGGACTCGACTGATTTAGCAAACGGAACATCGGCACACAAAACCGCAAGCACAGAAGTG
GTAAGCGCTGAAGCAGCGCCCGTACCACCGGAAATTTTGCCGGAACAAGGCCTCGCTACAACACAGACAGATGAAACAGC
CAATGCCTTGCCTATTGTAGAAACAGCCGAACAAGCAATGGGCGAAACATCCGCAGCTAAAGCCGAAGAAGCTGCCGCGT
TTGATGAGCACGACCCTGATGGGCAGGCAAACAATGAACAAGCCGTCAGTGAACCAGTAGCTGTGGAATCAGTAGTGCCA
TCCAGTACCGACCAAGCTGCTATCGAGCCCGCTCCAGAGCAGCCTGCTGCACTCGGTTGGGCTGCCCGCCTCAGGCAAGG
CTTGAGCAAATCGCGCCAGCAGATGGCCAAGTCGCTGGCCAGCGTGTTTGGCGGCGGCAAGATAGATGAGGACCTGTATG
AAGAGCTGGAAACCGTGCTGCTTACCAGCGATATGGGCATTGAAGCCACCGAGCATCTGATGGAAGAAGTGCGCCAGCGC
GTGAGCCTGCGCGGCTTGAAAGACGGCGAAGAATTGCGTGGCGCATTGAAAGAGGCCATCTACGAGCTGATTAAACCGCT
GGAGCAGCCGCTGACCTTGCCCGCAGACAAACGGCCGTTTGTGATTATGCTTGCCGGCATCAACGGCGCGGGCAAAACCA
CTTCCATCGGCAAGCTGGCCAAATATTTTCAAGGCCAGGGCAAAAGCGTGCTGTTGGCCGCCGGCGACACTTTCCGCGCC
GCTGCCCGCGAGCAGCTGGCCGAATGGGGCGAGCGTAACGGCGTTACCGTGATTTCCCAAGCCTCCGGTGACTCTGCCGC
CGTCTGCTTTGATGCCGTGGAAGCCGCCAAAGCGCGCGGTATCGACATCGTGCTGGCCGACACCGCCGGCCGCCTGCCCA
CGCAAACCCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAGAAATCCATGCCCGACGCGCCGCATGAAATC
GTGGTGGTGCTGGATGCCAATATCGGCCAGAATGCCGTGAACCAAGTGATTGCCTTCGATGACGCGCTGGGACTTACCGG
CCTCATTGTGACCAAGCTCGACGGCACAGCCAAAGGCGGCGTGCTGGCTGCGCTGGCCAGCCGCCGCCCCGTGCCGGTAC
GCTTTATCGGCGTGGGGGAGGGCATCGACGACTTGCGCCCATTCAATGCCCGAGAGTTTGTAGACGCACTGCTGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(279-478)

SRP54-type protein, helical bundle domain (SRP54_N)

(195-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

62.893

99.791

0.628

Multiple sequence alignment