Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ACF3NW_RS02965 Genome accession   NZ_CP171110
Coordinates   563591..564052 (-) Length   153 a.a.
NCBI ID   WP_392423550.1    Uniprot ID   -
Organism   Eikenella halliae strain WGS1533     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 558591..569052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NW_RS02955 (ACF3NW_02955) gcvP 559761..562613 (-) 2853 WP_392423549.1 aminomethyl-transferring glycine dehydrogenase -
  ACF3NW_RS02960 (ACF3NW_02960) - 562804..563337 (-) 534 WP_314251241.1 hypothetical protein -
  ACF3NW_RS02965 (ACF3NW_02965) recX 563591..564052 (-) 462 WP_392423550.1 recombination regulator RecX Regulator
  ACF3NW_RS02970 (ACF3NW_02970) - 564039..564737 (-) 699 WP_064084248.1 phosphoglycolate phosphatase -
  ACF3NW_RS02975 (ACF3NW_02975) - 564978..565319 (-) 342 WP_392423551.1 YbaB/EbfC family nucleoid-associated protein -
  ACF3NW_RS02980 (ACF3NW_02980) dnaX 565374..567647 (-) 2274 WP_392423552.1 DNA polymerase III subunit gamma/tau -
  ACF3NW_RS02985 (ACF3NW_02985) - 567818..568069 (-) 252 WP_003822311.1 DUF333 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17822.94 Da        Isoelectric Point: 8.0031

>NTDB_id=1060104 ACF3NW_RS02965 WP_392423550.1 563591..564052(-) (recX) [Eikenella halliae strain WGS1533]
MTAVKSLRSRALDLLSRREMSQAELRRKLAPYAEDPAEIDALLQEFADRNWQSDRRYAESYVYSKSSRYGRLRLAQGLQQ
QKLDSELIEAALPDRSSERATACAVLRKKFKQPPADFAAQQRAARFLAYRGFDHDTIRHALDKAWQDEEEWDE

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1060104 ACF3NW_RS02965 WP_392423550.1 563591..564052(-) (recX) [Eikenella halliae strain WGS1533]
ATGACCGCCGTTAAATCCCTGCGCAGCCGCGCCTTAGATTTGTTGTCGCGGCGGGAAATGTCGCAGGCCGAACTGCGGCG
CAAACTCGCGCCCTACGCCGAAGACCCTGCTGAAATCGATGCTTTGCTGCAAGAGTTTGCCGACCGCAACTGGCAATCCG
ACCGGCGCTACGCCGAAAGCTACGTATACAGCAAAAGCAGCCGCTACGGCCGCCTGCGCCTCGCCCAAGGCCTGCAACAG
CAAAAGTTGGACAGCGAACTCATCGAAGCCGCCCTGCCCGACCGCAGCAGCGAACGCGCCACCGCCTGCGCCGTGCTGCG
TAAAAAGTTCAAACAGCCCCCCGCCGACTTCGCCGCACAGCAACGCGCCGCCCGCTTCCTCGCCTACCGCGGCTTCGACC
ACGACACCATCCGCCACGCGCTGGATAAAGCCTGGCAGGACGAAGAAGAGTGGGACGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

56.209

100

0.562

Multiple sequence alignment