Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACF3MZ_RS09855 Genome accession   NZ_CP171108
Coordinates   2187468..2188418 (-) Length   316 a.a.
NCBI ID   WP_394050749.1    Uniprot ID   -
Organism   Cohnella sp. WGS1546     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2182468..2193418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3MZ_RS09835 (ACF3MZ_09835) - 2184347..2184673 (-) 327 WP_394050741.1 antibiotic biosynthesis monooxygenase -
  ACF3MZ_RS09840 (ACF3MZ_09840) - 2184699..2185703 (-) 1005 WP_394050743.1 siderophore ABC transporter substrate-binding protein -
  ACF3MZ_RS09845 (ACF3MZ_09845) - 2185770..2186528 (-) 759 WP_394050745.1 ABC transporter ATP-binding protein -
  ACF3MZ_RS09850 (ACF3MZ_09850) - 2186525..2187475 (-) 951 WP_394050747.1 iron chelate uptake ABC transporter family permease subunit -
  ACF3MZ_RS09855 (ACF3MZ_09855) ceuB 2187468..2188418 (-) 951 WP_394050749.1 ABC transporter permease Machinery gene
  ACF3MZ_RS09860 (ACF3MZ_09860) - 2188528..2190063 (-) 1536 WP_394050751.1 helix-turn-helix domain-containing protein -
  ACF3MZ_RS09865 (ACF3MZ_09865) copZ 2190151..2190351 (-) 201 WP_394050753.1 copper chaperone CopZ -
  ACF3MZ_RS09870 (ACF3MZ_09870) - 2190445..2192727 (-) 2283 WP_394050755.1 ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34284.32 Da        Isoelectric Point: 10.0853

>NTDB_id=1060069 ACF3MZ_RS09855 WP_394050749.1 2187468..2188418(-) (ceuB) [Cohnella sp. WGS1546]
MKIGYLWFALIVLSCTSLFVGVSDISPRHLFSMTEYQWEIMKISRIPRLISIVIAGVGMSVVGLIMQQLARNKFVSPSTA
GTTDSASLGVLVSILLFPGASPLVKVAIAFVFALAGTLLFMRILTKIQFRDPILIALVGLMFGGIVGSATTFLALKYNLL
QSVNSWLFGSFSSILKGNYEMLYVSLPLILIAYLYANRFTIAGMGEEFAVNLGLKYRQVVNLGLGIVALVSAVILLTVGS
LPFLGLIIPNLVSIYKGDNLRSSLPHTALLGAVFVLACDILGRLIIYPYEISIGLMVGVIGSGIFLYLLLRRKNYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1060069 ACF3MZ_RS09855 WP_394050749.1 2187468..2188418(-) (ceuB) [Cohnella sp. WGS1546]
ATGAAAATCGGATACCTGTGGTTTGCGCTAATCGTTCTTTCTTGTACATCGTTGTTCGTCGGGGTGTCGGATATTTCGCC
GCGGCACTTGTTCAGCATGACCGAGTATCAGTGGGAGATCATGAAGATCAGCCGGATTCCCCGCCTGATCAGCATCGTGA
TCGCCGGCGTGGGCATGAGCGTCGTCGGACTCATCATGCAGCAGCTGGCCCGCAACAAATTCGTCTCGCCTTCTACGGCG
GGCACGACGGATTCCGCGAGCTTGGGCGTGCTCGTCTCGATCCTGCTTTTCCCCGGAGCTTCGCCGCTCGTGAAGGTCGC
CATCGCGTTCGTCTTCGCCTTGGCCGGGACGCTGCTGTTCATGCGGATTTTGACCAAAATCCAGTTTCGCGATCCGATTC
TCATCGCGCTCGTCGGCTTGATGTTCGGCGGCATCGTCGGTTCGGCGACGACGTTCCTGGCGCTCAAATACAATTTGCTG
CAGAGCGTGAACAGCTGGCTGTTCGGAAGCTTCTCGAGCATTCTGAAGGGCAATTACGAGATGCTCTACGTCAGCCTGCC
GCTTATCCTGATCGCCTACTTGTACGCGAACCGGTTTACGATCGCGGGCATGGGCGAAGAGTTTGCGGTCAATCTCGGGC
TGAAGTACCGCCAGGTCGTCAATCTCGGCCTCGGGATCGTGGCGCTCGTCTCCGCGGTCATCCTGCTGACGGTCGGCTCG
CTGCCGTTCCTCGGACTGATCATTCCGAATCTGGTCTCGATCTACAAGGGCGACAATTTGCGCAGCAGCTTGCCCCATAC
GGCATTGCTCGGCGCCGTGTTCGTGCTGGCCTGCGACATCTTGGGAAGGCTCATCATCTATCCGTACGAGATTTCGATCG
GGCTGATGGTCGGCGTCATCGGAAGCGGAATCTTCCTCTACTTGCTGCTAAGGAGGAAGAACTATGCTTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.667

94.937

0.481

Multiple sequence alignment