Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACF3NK_RS12845 Genome accession   NZ_CP171104
Coordinates   2794178..2794474 (-) Length   98 a.a.
NCBI ID   WP_008710410.1    Uniprot ID   A0AAW5K377
Organism   Cloacibacillus evryensis strain WGS1925     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2789178..2799474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NK_RS12825 (ACF3NK_12825) - 2789734..2791041 (+) 1308 WP_051484857.1 ISNCY family transposase -
  ACF3NK_RS12830 (ACF3NK_12830) - 2791262..2792572 (+) 1311 WP_392438336.1 IS30 family transposase -
  ACF3NK_RS12835 (ACF3NK_12835) - 2792920..2793282 (-) 363 WP_008710415.1 hypothetical protein -
  ACF3NK_RS12840 (ACF3NK_12840) - 2793410..2793616 (-) 207 WP_256196652.1 hypothetical protein -
  ACF3NK_RS12845 (ACF3NK_12845) HI0659 2794178..2794474 (-) 297 WP_008710410.1 helix-turn-helix transcriptional regulator Machinery gene
  ACF3NK_RS12850 (ACF3NK_12850) - 2794467..2794832 (-) 366 WP_256196650.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACF3NK_RS12860 (ACF3NK_12860) - 2795460..2797661 (+) 2202 WP_256196649.1 cation-translocating P-type ATPase -
  ACF3NK_RS12865 (ACF3NK_12865) - 2797665..2797823 (+) 159 WP_256196647.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10690.53 Da        Isoelectric Point: 10.4094

>NTDB_id=1060045 ACF3NK_RS12845 WP_008710410.1 2794178..2794474(-) (HI0659) [Cloacibacillus evryensis strain WGS1925]
MSEKAISPKGRSWSEVREQILTPEERGASNLRVAMMVELAAARAEKGISQKKLEALSGVKQPVIARMEKGYTSPQLDTVL
KVLAPLGKTLYIGDLPRA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1060045 ACF3NK_RS12845 WP_008710410.1 2794178..2794474(-) (HI0659) [Cloacibacillus evryensis strain WGS1925]
ATGAGTGAAAAAGCTATCAGCCCAAAGGGGCGCAGCTGGAGCGAGGTGCGCGAGCAGATTTTGACGCCAGAGGAGAGGGG
CGCGTCCAATCTGCGAGTCGCGATGATGGTTGAATTGGCCGCCGCGAGGGCGGAGAAGGGCATTTCACAGAAAAAACTCG
AGGCTTTGAGCGGCGTAAAACAGCCTGTTATCGCGCGTATGGAGAAGGGATATACCAGCCCGCAGCTGGATACTGTCCTT
AAGGTTTTGGCCCCTTTGGGCAAGACTCTTTATATAGGGGATCTGCCGAGGGCGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(39-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

63.218

88.776

0.561

Multiple sequence alignment