Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFG4S_RS17070 Genome accession   NZ_CP170991
Coordinates   3962241..3963767 (+) Length   508 a.a.
NCBI ID   WP_392530264.1    Uniprot ID   -
Organism   Nostoc sp. C117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3957241..3968767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFG4S_RS17045 - 3957494..3958222 (+) 729 WP_392530259.1 LEVG family PEP-CTERM protein -
  ACFG4S_RS17050 - 3958449..3958967 (-) 519 WP_392530260.1 DUF456 domain-containing protein -
  ACFG4S_RS17055 - 3959449..3960354 (+) 906 WP_392530261.1 M48 family metallopeptidase -
  ACFG4S_RS17060 - 3960582..3961241 (-) 660 WP_392530262.1 cofactor assembly of complex C subunit B -
  ACFG4S_RS17065 rpaB 3961342..3962070 (-) 729 WP_392530263.1 response regulator transcription factor RpaB -
  ACFG4S_RS17070 radA 3962241..3963767 (+) 1527 WP_392530264.1 DNA repair protein RadA Machinery gene
  ACFG4S_RS17075 - 3963889..3964635 (+) 747 WP_392536008.1 Uma2 family endonuclease -
  ACFG4S_RS17080 - 3964965..3965240 (+) 276 WP_392530265.1 hypothetical protein -
  ACFG4S_RS17085 - 3965319..3965645 (-) 327 WP_392530266.1 hypothetical protein -
  ACFG4S_RS17090 - 3965730..3968384 (+) 2655 WP_392530267.1 protein kinase -
  ACFG4S_RS17095 - 3968412..3968699 (+) 288 WP_392530268.1 DUF4258 domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54511.38 Da        Isoelectric Point: 4.9280

>NTDB_id=1059951 ACFG4S_RS17070 WP_392530264.1 3962241..3963767(+) (radA) [Nostoc sp. C117]
MAKPKTFYVCNDCGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPTRGGVSGWQSTQGNGKSHSKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKPL
SVVNEEKVTVVVDSTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVTDGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTADDLEPDEEE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1059951 ACFG4S_RS17070 WP_392530264.1 3962241..3963767(+) (radA) [Nostoc sp. C117]
ATGGCAAAGCCAAAAACCTTCTACGTTTGTAACGATTGTGGGGCAGAATCGCCTCAATGGTTTGGGAAATGTCCAGCTTG
CGGCACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCATCAGTAGATGTACCCACGAGAGGGGGAGTAAGTGGTT
GGCAATCAACTCAAGGGAATGGCAAATCTCACTCTAAACCAGCTAAAGCACGAGCCTCTTTAACATTTGATCAAATTACC
GATCGCCAAATTGCTCGCTGGGAATCTGGTTATGGAGAATTGGATCGGGTGCTTGGGGGTGGGGTTGTCCCTGGTTCTAT
GGTGCTGATTGGTGGCGATCCGGGTATTGGTAAATCTACTCTATTACTGCAAGTATCAAATCAATTAGCGCAGAAATATC
GCATCCTTTATGTAACTGGTGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCTCGTTTGGGAGTATCAAAACCCTTA
AGTGTGGTTAATGAAGAGAAGGTAACGGTAGTAGTAGATAGTACGCTTCCTATAGACCCTGATAGTATCGGTGCAGATTT
ATATGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGAGAAATAGACTCTCTCAAGCCAAATGTGGCAGTAATAGATA
GTATCCAAACGGTGTTTTTTCCGGCGCTGACTTCTGCACCAGGTTCGGTGGCTCAGGTACGGGAATGTACCGCAGCATTG
ATGAAGGTAGCGAAGCATGAAGATGTCACCATGCTGATTGTCGGACACGTGACCAAAGAAGGAGCGATCGCCGGGCCGAA
AGTCTTAGAACATTTAGTTGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGGTTATTACGCACAGTCA
AAAACCGCTTCGGCGCAACCCACGAAATCGGCATCTTTGAAATGGTGACGGATGGATTGCGGGAAGTCTCCAATCCCTCA
GAGCTATTTTTAGGTAACCGTGACGATCCCGCGCCAGGTACTGCCATTGTAGTTGCTTGCGAAGGCACCCGCCCCATCGT
TGTGGAATTGCAAGCTTTAGTAAGTCCTACCAGCTACCCTTCCCCTCGACGTGCTGGAACTGGCGTAGATTACAACCGCC
TAGTGCAAATTCTCGCCGTCTTAGAAAAACGCGTGGGAATTCCGATGTCCAAATTAGATTCCTACGTTGCTTCTGCGGGT
GGGTTGAATGTAGAAGAACCAGCAGTAGATTTAGGAATAGCGATCGCCATTGTAGCCAGTTTTCGCGATCGCATCGTCGA
TCCCGGCACAGTATTAATCGGTGAAGTTGGGTTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTGAAAG
AAGCAGCTAAGTTGGGATTTAAAAGAGCGATCGTGCCCAAAGGGACAAAATTCCCCGACTTAAATATTGAAATATTACCA
GTATCAAAAGTCATAGATGCAATTATCGCCGCCATCCCGCATCAGGAATTGACAGCCGACGATTTAGAACCCGATGAAGA
AGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

KaiC (ATPase)

(90-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.696

97.047

0.482
  radA Streptococcus mitis SK321

46.029

96.654

0.445
  radA Streptococcus mitis NCTC 12261

47.548

92.323

0.439
  radA Streptococcus pneumoniae Rx1

47.548

92.323

0.439
  radA Streptococcus pneumoniae D39

47.548

92.323

0.439
  radA Streptococcus pneumoniae R6

47.548

92.323

0.439
  radA Streptococcus pneumoniae TIGR4

47.548

92.323

0.439

Multiple sequence alignment