Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACFG4S_RS12960 Genome accession   NZ_CP170991
Coordinates   2910302..2911408 (+) Length   368 a.a.
NCBI ID   WP_392535189.1    Uniprot ID   -
Organism   Nostoc sp. C117     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2905302..2916408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFG4S_RS12935 - 2905594..2906106 (-) 513 WP_392535184.1 TIGR02652 family protein -
  ACFG4S_RS12940 - 2906520..2907047 (+) 528 WP_392535185.1 gamma carbonic anhydrase family protein -
  ACFG4S_RS12945 - 2907301..2907426 (+) 126 WP_392535186.1 photosystem II protein Y -
  ACFG4S_RS12950 - 2907544..2908839 (+) 1296 WP_392535187.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFG4S_RS12955 - 2908862..2910160 (-) 1299 WP_392535188.1 ABC transporter substrate-binding protein -
  ACFG4S_RS12960 pilM 2910302..2911408 (+) 1107 WP_392535189.1 type IV pilus assembly protein PilM Machinery gene
  ACFG4S_RS12965 - 2911413..2912189 (+) 777 WP_392535190.1 PilN domain-containing protein -
  ACFG4S_RS12970 - 2912186..2912953 (+) 768 WP_392535191.1 pilus assembly protein PilO -
  ACFG4S_RS12975 - 2913135..2915516 (+) 2382 WP_392535192.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40376.30 Da        Isoelectric Point: 4.4359

>NTDB_id=1059948 ACFG4S_RS12960 WP_392535189.1 2910302..2911408(+) (pilM) [Nostoc sp. C117]
MVKSFNSLFGKSNKGVGIELAPERVNVVQLRKQRQGLKLETFTSVAVPEGIVTDGQITDPAAMAQLIQQALAESKIKTSR
VATGVPGRDSIVRIIPVPAELDDKELREMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVHVLLVATRKEITDTY
ISTFEQAGLQIDVLEINSFALIRTIRDQLRQFGPQEAAVLVDIEFDSTEIAIIVNGVPQFSRTVPIGTYQMQTALARAMS
LPTSRDMELLQGMVITPTPIDGGKTGVTELNPGMAAVLRVLGELTDELRRSIDFYLNQSENLEVAQILLAGPGGGLQQLD
EFFTQRLSLPTSQIDPIGALSLEVDSEKYPQVQRSGLAIVLGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1059948 ACFG4S_RS12960 WP_392535189.1 2910302..2911408(+) (pilM) [Nostoc sp. C117]
GTGGTTAAAAGCTTCAATAGTCTGTTTGGCAAATCAAATAAAGGGGTCGGCATTGAACTTGCTCCCGAACGGGTGAATGT
AGTTCAGCTACGCAAGCAGCGTCAAGGCTTGAAACTAGAAACCTTTACATCGGTAGCTGTTCCAGAAGGCATAGTTACCG
ATGGACAAATCACCGACCCCGCAGCAATGGCGCAATTAATCCAGCAAGCGCTAGCTGAAAGCAAAATCAAAACTTCTCGA
GTTGCTACTGGTGTGCCAGGACGAGATTCCATCGTTCGGATAATACCAGTGCCAGCAGAGTTAGATGACAAAGAACTGCG
AGAAATGGTGCTAAACCATGAAGCAGGTTTGTATTTACCCTATCCTCGTGAAGAGGCTGATGTAGATTATCAGAAACTTG
GGTATTTTGTAGATGAAGATGGCATTGAAAAAGTACATGTACTCCTAGTTGCCACCCGCAAGGAGATAACAGATACCTAT
ATCAGTACATTTGAACAGGCAGGATTACAAATAGATGTTTTAGAAATTAACAGTTTTGCTCTAATTCGGACTATTCGCGA
TCAATTGCGACAATTTGGCCCGCAAGAAGCAGCAGTACTAGTTGATATCGAGTTCGATAGTACAGAAATTGCCATCATCG
TTAACGGAGTGCCACAATTTTCGCGCACAGTCCCAATCGGGACTTATCAAATGCAAACTGCCCTCGCTAGGGCAATGAGC
TTACCCACATCACGAGATATGGAACTGTTACAGGGAATGGTTATTACCCCAACTCCCATAGACGGAGGCAAAACCGGTGT
CACCGAACTCAATCCTGGTATGGCAGCGGTATTGAGAGTATTGGGAGAACTGACAGATGAATTGCGCCGTTCCATCGATT
TTTACCTCAATCAAAGTGAAAATTTGGAGGTGGCGCAGATTTTATTAGCTGGACCCGGAGGTGGACTCCAACAGTTAGAT
GAATTCTTTACTCAAAGATTGAGCTTGCCAACTAGCCAAATAGATCCAATCGGGGCTTTGTCTTTGGAAGTTGACAGCGA
GAAATATCCACAAGTACAACGCTCTGGGTTGGCGATCGTACTTGGTTTAGGAATGCGGGAGGTGTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-238)

Type IV pilus assembly protein PilM; (PilM_2)

(283-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

67.302

99.728

0.671

Multiple sequence alignment