Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AAA985_RS03145 Genome accession   NZ_AP028603
Coordinates   583018..583284 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   A0A654WS02
Organism   Streptococcus pneumoniae strain Pne2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578018..588284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA985_RS03125 (TKY181970_06120) - 578282..578791 (+) 510 WP_000619939.1 N-acetyltransferase -
  AAA985_RS03130 (TKY181970_06130) pheT 578868..581273 (+) 2406 WP_000961571.1 phenylalanine--tRNA ligase subunit beta -
  AAA985_RS03135 (TKY181970_06140) - 581341..582342 (-) 1002 WP_000597984.1 endonuclease/exonuclease/phosphatase family protein -
  AAA985_RS03140 - 582489..582892 (+) 404 Protein_619 helix-turn-helix domain-containing protein -
  AAA985_RS03145 (TKY181970_06160) HI0659 583018..583284 (+) 267 WP_001814186.1 helix-turn-helix transcriptional regulator Machinery gene
  AAA985_RS03150 (TKY181970_06170) metE 583545..585794 (+) 2250 WP_000108216.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AAA985_RS03155 (TKY181970_06180) metF 585858..586724 (+) 867 WP_001277841.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=105952 AAA985_RS03145 WP_001814186.1 583018..583284(+) (HI0659) [Streptococcus pneumoniae strain Pne2]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=105952 AAA985_RS03145 WP_001814186.1 583018..583284(+) (HI0659) [Streptococcus pneumoniae strain Pne2]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment