Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DK42_RS06955 Genome accession   NZ_CP007571
Coordinates   1389825..1390265 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain GBS2-NM     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384825..1395265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK42_RS06940 (DK42_07070) - 1385483..1386109 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  DK42_RS06945 (DK42_07075) rcrQ 1386217..1387971 (-) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  DK42_RS06950 (DK42_07080) rcrP 1387961..1389778 (-) 1818 WP_000481823.1 ABC transporter ATP-binding protein Regulator
  DK42_RS06955 (DK42_07085) rcrR 1389825..1390265 (-) 441 WP_000431168.1 MarR family transcriptional regulator Regulator
  DK42_RS06960 (DK42_07090) - 1390533..1392605 (+) 2073 WP_000726912.1 bifunctional metallophosphatase/5'-nucleotidase -
  DK42_RS06965 (DK42_07095) - 1392642..1393052 (-) 411 WP_000594934.1 peptide deformylase -
  DK42_RS06970 (DK42_07100) gdhA 1393122..1394471 (-) 1350 WP_000200441.1 NADP-specific glutamate dehydrogenase -
  DK42_RS06975 (DK42_07105) - 1394639..1395148 (+) 510 WP_000870955.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=105944 DK42_RS06955 WP_000431168.1 1389825..1390265(-) (rcrR) [Streptococcus agalactiae strain GBS2-NM]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=105944 DK42_RS06955 WP_000431168.1 1389825..1390265(-) (rcrR) [Streptococcus agalactiae strain GBS2-NM]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411

Multiple sequence alignment