Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACFKHK_RS09540 Genome accession   NZ_CP170760
Coordinates   1807071..1807784 (-) Length   237 a.a.
NCBI ID   WP_239604262.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1802071..1812784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS09520 trxA 1802904..1803218 (-) 315 WP_174846361.1 thioredoxin -
  ACFKHK_RS09525 - 1803480..1805813 (-) 2334 WP_392461999.1 endonuclease MutS2 -
  ACFKHK_RS09530 - 1806151..1806699 (-) 549 WP_392462001.1 CvpA family protein -
  ACFKHK_RS09535 - 1806696..1807013 (-) 318 WP_024391756.1 hypothetical protein -
  ACFKHK_RS09540 treR 1807071..1807784 (-) 714 WP_239604262.1 trehalose operon repressor Regulator
  ACFKHK_RS09545 treP 1808015..1810015 (+) 2001 WP_392462002.1 PTS system trehalose-specific EIIBC component -
  ACFKHK_RS09550 treC 1810094..1811716 (+) 1623 WP_392462004.1 alpha,alpha-phosphotrehalase -
  ACFKHK_RS09555 - 1811800..1812060 (+) 261 WP_312247828.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27607.59 Da        Isoelectric Point: 6.5135

>NTDB_id=1059282 ACFKHK_RS09540 WP_239604262.1 1807071..1807784(-) (treR) [Streptococcus parasuis strain FZ2]
MKKYQEIYNDLKEKIRTNVYPAETSLPTEQQLQEMYQVSRDTVRKALAILTERGMIQKVQGRGSLVLKQELLNFPISGLT
SYQELTDALQLQSDTAVVDLELITVNSNLSQLTGFEPFSKVWKIVRTRSIDGKISVVDTDYLSSDIVPKMDKEIAKGSIY
QYLEKELKLDISYAQKEITVEPTSWEERELMKTQDDYLVLIKSRVFLSDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1059282 ACFKHK_RS09540 WP_239604262.1 1807071..1807784(-) (treR) [Streptococcus parasuis strain FZ2]
ATGAAAAAATATCAAGAAATATATAATGATTTAAAAGAGAAAATACGAACAAATGTCTATCCTGCTGAGACTTCTTTACC
AACTGAACAACAATTGCAAGAAATGTATCAAGTTAGCCGAGATACTGTTCGAAAAGCACTGGCTATTCTGACAGAACGCG
GAATGATTCAAAAAGTTCAAGGAAGAGGTTCTCTAGTTTTAAAACAGGAACTATTGAATTTTCCTATTTCTGGCTTAACT
TCGTATCAAGAATTGACGGATGCTTTGCAGTTGCAGTCAGATACAGCGGTTGTTGATTTGGAGCTCATTACAGTAAATAG
TAATTTATCTCAATTAACAGGATTTGAACCATTTAGTAAAGTATGGAAAATTGTACGTACAAGATCCATAGATGGAAAGA
TTTCAGTAGTTGATACGGATTATCTCTCTTCAGATATTGTTCCGAAGATGGATAAAGAAATCGCAAAAGGTTCAATTTAT
CAATATTTAGAAAAAGAACTAAAATTGGATATATCCTATGCTCAAAAAGAAATTACGGTTGAACCAACCAGTTGGGAAGA
ACGTGAATTGATGAAGACTCAAGATGATTACTTGGTATTGATAAAATCAAGAGTTTTTCTAAGTGATACACAACAATTTC
AATATACTGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTGGATTTTGCTCGTAGAAAGCATTCACTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.282

98.734

0.506

Multiple sequence alignment