Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACFKHK_RS09180 Genome accession   NZ_CP170760
Coordinates   1740722..1741456 (-) Length   244 a.a.
NCBI ID   WP_392461950.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735722..1746456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS09155 - 1736661..1737515 (-) 855 WP_392461948.1 helix-turn-helix domain-containing protein -
  ACFKHK_RS09160 rpmB 1737815..1738003 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  ACFKHK_RS09165 trmB 1738206..1738844 (-) 639 WP_171989646.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACFKHK_RS09170 ccrZ 1738841..1739635 (-) 795 WP_105127234.1 cell cycle regulator CcrZ -
  ACFKHK_RS09175 - 1739685..1740725 (-) 1041 WP_171989647.1 ABC transporter permease -
  ACFKHK_RS09180 pptA 1740722..1741456 (-) 735 WP_392461950.1 ABC transporter ATP-binding protein Regulator
  ACFKHK_RS09185 - 1741519..1741932 (+) 414 WP_130555357.1 HIT family protein -
  ACFKHK_RS09190 - 1741934..1742239 (+) 306 WP_312249545.1 chemotaxis protein -
  ACFKHK_RS09195 - 1742377..1743552 (-) 1176 WP_171989650.1 biofilm formation/cell division transcriptional regulator BrpA -
  ACFKHK_RS09200 - 1743549..1744076 (-) 528 WP_216806403.1 GNAT family N-acetyltransferase -
  ACFKHK_RS09205 tsaE 1744069..1744509 (-) 441 WP_024404749.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ACFKHK_RS09210 - 1744615..1746279 (-) 1665 WP_174846647.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27021.35 Da        Isoelectric Point: 4.6053

>NTDB_id=1059281 ACFKHK_RS09180 WP_392461950.1 1740722..1741456(-) (pptA) [Streptococcus parasuis strain FZ2]
MLEVKNITGGYINIPVVKDVSFTVESGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYDLTWDQAWSRVQGLLAVFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLVNLLEEEKAKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1059281 ACFKHK_RS09180 WP_392461950.1 1740722..1741456(-) (pptA) [Streptococcus parasuis strain FZ2]
ATGTTAGAAGTAAAAAATATAACAGGAGGCTACATCAATATTCCCGTAGTGAAAGATGTATCTTTCACTGTTGAGAGCGG
TCAGTTAGTTGGCTTAATTGGATTGAATGGTGCAGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCAGAGAATTATCGGAAGAAAATTGGATTTATCCCT
GAAACACCTAGCTTGTATGAGGAATTGACGCTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATGATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAGCGGTTTTTCGGTTGGATGAAAAATTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATTATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGACGAGCCGTTT
TTAGGGCTGGATCCTGTAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAGGAACTTCAATTCTGAT
GTCTACTCATGTTCTTGATTCGGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAAGGTCAGGTTCGTGCAACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

70.711

97.951

0.693
  pptA Streptococcus thermophilus LMD-9

69.456

97.951

0.68

Multiple sequence alignment