Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DK42_RS05390 Genome accession   NZ_CP007571
Coordinates   1066478..1067548 (-) Length   356 a.a.
NCBI ID   WP_000817929.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS2-NM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061478..1072548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK42_RS05370 (DK42_05480) - 1062013..1062765 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  DK42_RS05375 (DK42_05485) - 1062767..1064722 (+) 1956 WP_000499559.1 FtsX-like permease family protein -
  DK42_RS05380 (DK42_05490) braR 1064832..1065500 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  DK42_RS05385 (DK42_05495) - 1065497..1066435 (+) 939 WP_000620981.1 sensor histidine kinase -
  DK42_RS05390 (DK42_05500) xerS 1066478..1067548 (-) 1071 WP_000817929.1 tyrosine recombinase XerS Machinery gene
  DK42_RS05395 (DK42_05505) - 1068001..1069662 (+) 1662 WP_000093960.1 peptide ABC transporter substrate-binding protein -
  DK42_RS05400 (DK42_05510) - 1069695..1070468 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  DK42_RS05405 (DK42_05515) - 1070458..1071144 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41375.57 Da        Isoelectric Point: 9.3616

>NTDB_id=105928 DK42_RS05390 WP_000817929.1 1066478..1067548(-) (xerS) [Streptococcus agalactiae strain GBS2-NM]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLISHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=105928 DK42_RS05390 WP_000817929.1 1066478..1067548(-) (xerS) [Streptococcus agalactiae strain GBS2-NM]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATACTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTTACAACGCTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAAAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGGGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAATTAGCCACCAATTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment